bwa

There are 0 repository under bwa topic.

• divonlan / genozip

  A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

  genomicscompressionfastqvcfbamsamfastagvf23andmegzipbgzipsamtoolsbwacram
  Language:C 171

• ngless-toolkit / ngless

  NGLess: NGS with less work

  haskellbioinformaticsbioinformatics-pipelinesamtoolsbwanext-generation-sequencingfastq-formatfastqsciencengsmetagenomicsgenomicshaskell-language
  Language:Haskell 150
• FastQ-Screen

  StevenWingett / FastQ-Screen

  Detecting contamination in NGS data and multi-species analysis

  ngsmetagenomicsbowtiebwabowtie2contaminationdetectionfastq
  Language:HTML 79

• 4dn-dcic / docker-4dn-hic

  Docker for 4DN Hi-C processing pipeline

  hi-cbioinformaticsdockerpairixcoolerbwajuicerpairsqcu01ca200059ot2od032119
  Language:Common Workflow Language 60

• plmilord / Hass.io-custom-component-spaclient

  Home Assistant integration - Spa Client

  balboabwahacshassiohome-assistantspaclient
  Language:Python 49

• IARCbioinfo / alignment-nf

  Whole Exome/Whole Genome Sequencing alignment pipeline

  nextflowgatkbwaalignmentngswhole-exome-sequencingwhole-genome-sequencing
  Language:Nextflow 28

• Juke34 / AliNe

  Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

  bowtie2bwahisat2minimap2nextflownucmerstargraphmap2bbmapbowtiekallistongmlrnovoalignsubreadbwa-swsublongbmw-mem2salmonstarlonglast
  Language:Nextflow 20

• databricks / genomics-pipelines

  secondary analysis pipelines parallelized with apache spark

  genomicsgatkbwastarmutect2
  Language:Scala 16

• SushiLab / mVIRs

  prophagesalignmentbwaoprsmetagenomics
  Language:Python 12

• TRON-Bioinformatics / tronflow-alignment

  Nextflow pipeline for BWA, BWA2 and STAR alignments

  bwatronflowbioinformaticsngsrna-seq
  Language:Nextflow 12

• mnievesc / Ancient_mtDNA_Pipeline

  Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

  ancient-dna-sequencesfastq-filessamtoolsbam-filespipelinemtdnabcftoolsbwafastqc
  Language:Shell 10

• abs-tudelft / variant-calling-at-scale

  Scalable and High Performance Variant Calling on Cluster Environments

  gcp-dataproc-clusterbwaduplicates-removalvariant-callingdeepvariantminimap2
  Language:Python 9

• jonathanBieler / BurrowsWheelerAligner.jl

  Binding for bwa

  bioinformaticsbwajulia-language
  Language:Julia 8

• DKFZ-ODCF / AlignmentAndQCWorkflows

  The DKFZ alignment workflow plugin originally developed at the eilslabs

  alignmentbam-filesbwabwa-memconda-environmentfastq-filesquality-controlroddyweswgbsworkflow
  Language:Python 7

• rifkiramadhan / bwa-storegg-server

  Ini adalah project Server-Side dari kelas BWA MERN 2021

  bwastoreggserver-sidewebsite
  Language:EJS 7

• broadinstitute / gatk-bwamem-jni

  JNI code for bwa mem

  bwajnibwamembwa-memaligner
  Language:Java 4

• oskarvid / Selma

  Germline Variant Calling Pipeline built in Snakemake

  bwasnakemakepipeline
  Language:Shell 4

• rifkiramadhan / bwa-storegg-client

  Ini adalah project Client-Side dari kelas BWA MERN 2021

  websiteclient-sidebwastoregg
  Language:TypeScript 4

• apeltzer / BWA-Mismatches

  bwamappingparametershiny
  Language:R 3

• modupeore / VAP

  VAP : For Reference mapping and Variant detection.

  gatkpipelinevariantssnpspicardbwabowtietophat2hisat2starbioinformatics
  Language:Perl 3

• AntoineHo / runGATK

  Small GATK alignment and variant calling pipeline using python

  gatk4parallelpython-wrappervariant-callingalignmentbwabwa-mempipelinevcfgenomicspopulationpopulation-genomics
  Language:Python 2

• fajar7xx / android-movie-ticket-booking

  this is just impelementation from movie ticketing like cinema21, just simple and buat pusing. hahahah.

  androidandroid-applicationandroid-indonesiabwabuildwithanggakotlinfirebase
  Language:Kotlin 2

• hewillk / aligner

  Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.

  fm-indexsequence-alignmentbwabwa-mem2smith-waterman
  Language:C++ 2

• LidiaGS / g-d_algorithm

  bioinformatics-pipelinebwabwa-memsamtools
  Language:Python 2

• tdayris-perso / wes-mapping-bwa-gatk

  Map and post-process your bams for SNP calling

  snakemake-workflowsbioinformatics-pipelinereproducible-researchwhole-exome-sequencingbwagatk4fastqcmultiqc
  Language:Python 2

• celalp / parse_pileup

  Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

  pileupheteroplasmysamtoolsbwa
  Language:Python 1

• crisprVerse / crisprBwa

  BWA-based alignment of CRISPR gRNA spacer sequences

  alignerbioconductorbioconductor-packagebwacrisprcrispr-analysiscrispr-cas9crispr-designcrispr-targetgrnagrna-sequencegrna-sequencessgrnasgrna-design
  Language:R 1

• crisprVerse / Rbwa

  R wrapper for BWA-backtrack and BWA-MEM aligners

  alignmentbwabwa-memdna-sequencesdna-sequencing
  Language:C 1

• gustaveroussy / wes-snp-bwa-mutect2-annovar

  Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

  wessnpbwamutect2annovar
  1

• kalilamali / FishDNA_pipeline

  Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

  fastqctrimmomaticncbibwavcftoolsplinkrgenomicsfisheriesusanorwaybash
  1

• MDCIII / 1603_16_72

  1603:16:72 🇧🇼

  botswanabwaunm49-072
  1

• Moha-cm / RNAseq-Analysis

  Bulk Rna-seq Analysis

  bash-scriptbwafastqcrr-markdownrna-seq-analysistrimmomaticfeaturescountdeseq2-analysisgdc-portalgene-expressiongetxtcga
  Language:HTML 1

• pedricolino / cnakepit

  A Snakemake pipeline for copy number variant calling without normal tissue samples

  bioinformaticsbwacnacnvcnvkitcondacopynumbervariationmutect2panelspurecnsequencing-datasnakemaketargeted-sequencing
  Language:Python 1

• renatopuga / exoma-de-rato

  Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4

  bioinformaticsexomerattus-norvegicusbwagatk4vepannotationseducation
  Language:HTML 1

• Syahro / cozy

  This app abaut finding a homestay and I use for practice code.

  bwaflutterflutter-appflutter-widgetsflutter-exampleflutter-practice
  Language:Dart 1

• Syahro / game_stream_app

  a design apps for play streaming game,

  flutterbwaflutter-appsflutter-examplesflutter-widgetsflutter-practice
  Language:Dart 1