Gustave Roussy

Gustave Roussy's repositories

sopa

Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

Language:PythonBSD-3-Clause79 6 44

EaCoN

Easy Copy Number !

Language:RMIT20 3 13

FG-Lab

Language:R8 1 4

CFS

R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

Language:R6 2 3

MetaPRISM_Public

Code support all the analyses and figures for the MetaPRISM paper.

Language:PythonBSD-3-Clause600

single-cell

Language:RGPL-3.0300

advancedQC

Language:JavaScriptMIT100

IFSBM-bigdata

Repository with the contents for the coding exercices and the lectures of module 11 of ISFBM university diploma.

Language:HTML100

Rstuff

A compilation of R scripts for different, widely diverse purposes

Language:RGPL-3.01 50

CTAP

Language:Python010

CustOmics

A deep-learning framework for multi-omics integration

MIT000

DAISY_Public

Public repository supporting the paper of the DAISY study.

Language:Python020

docker-registry

Language:Dockerfile000

EaCoN.cache

A dataset package that contains cached information for genome, chromosomes and genomic annotations, to be used with EaCoN / EaCoNiC.

MIT000

EaCoNiC

Easy Copy Number, in Cohort !

Language:RMIT000

long-reads-bulk

Long-read Bulk DNA-seq pipeline

000

macroverse

MIT000

MultiQC_SAV

MultiQC plugin replicating the most used plots and tables from Illumina's SAV

Language:PythonMIT010

OSIRIS-RWD

Implementation guide - SOs

000

OSTEOMICS_pub

Code associated to the publication : "Immune infiltrate and tumor microenvironment transcriptional programs stratify pediatric osteosarcoma into prognostic groups at diagnosis"

Language:R000