crispr

There are 10 repositories under crispr topic.

• davidliwei / awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  awesomeawesome-listawesome-listscas9crisprcrispr-analysiscrispr-cas9genome-editing
  475

• lucapinello / CRISPResso

  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

  ampliconcas9crisprcrispr-analysiscrispr-cas9dockerngspython
  Language:Python 130

• ctSkennerton / minced

  Mining CRISPRs in Environmental Datasets

  bioinformaticscrispr
  Language:Java 97

• Russel88 / CRISPRCasTyper

  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

  crispr-analysiscascrisprcrispr-cascrispr-cas9bioinformatics
  Language:Python 88

• synthego-open / ice

  Synthego ICE - Inference of CRISPR Editing software

  crisprcrispr-analysissanger
  Language:Python 62

• mckennalab / FlashFry

  FlashFry: The rapid CRISPR target site characterization tool

  bioinformaticscrisprcrispr-cas9genome-editing
  Language:Scala 60

• RicardoGEsteves / omniscient

  Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.

  axiosclerkcrisprnextjsopenaipostgresqlprismareactreact-hook-formreact-hot-toastreact-markdownreplicateshadcn-uistripesupabasetailwindcsstypescriptzodzustand
  Language:TypeScript 49

• faatehim / xplain

  :earth_americas: Complex Topics Explained For Your Level And Background. :pencil2:

  bitcoincrisprethereumartificial-intelligenceknowledgewiki
  Language:HTML 43

• broadinstitute / cell-health

  Predicting Cell Health with Morphological Profiles

  carpenter-labmorphological-profilingcrisprcell-paintingcancer2015-07-01-cell-health
  Language:HTML 35

• ctSkennerton / crass

  The CRISPR assembler

  bioinformaticscrispr
  Language:C++ 34

• soedinglab / spacepharer

  SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

  crisprhost-pathogensequence-analysisbioinformatics
  Language:C 33

• epigen / crop-seq

  Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

  bioinformaticscrisprcrispr-analysissingle-cell
  Language:Python 29

• fulcrumgenomics / guide-counter

  A better, faster way to count guides in CRISPR screens.

  bioinformaticscrisprgenomics
  Language:Rust 26

• nf-core / crisprseq

  A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

  crisprcrispr-analysiscrispr-casnextflownf-corengspipelineworkflow
  Language:Nextflow 21

• ArcInstitute / ScreenPro2

  Flexible analysis of high-content CRISPR screening

  crisprcrispr-analysiscrispr-cas9ngs-analysisperturbation-screenphenotypessequencing-datacrispr-cas12functional-genomics
  Language:Python 18

• crisprVerse / crisprDesign

  Comprehensive design of CRISPR gRNAs for nucleases and base editors

  bioconductorbioconductor-packagecrisprcrispr-cas9crispr-designcrispr-targetgenomics-analysisgrnagrna-sequencegrna-sequencessgrnasgrna-design
  Language:R 17

• rraadd88 / beditor

  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

  crisprbase-editinggenome-wide-targeted-mutagenesisguide-rna-library
  Language:Python 17

• keoughkath / AlleleAnalyzer

  A software tool for personalized and allele-specific CRISPR editing.

  allele-specific-sgrnascrisprcrispr-cas9sgrna
  Language:Jupyter Notebook 16

• sellerslab / gemini

  GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

  computational-biologycrisprgenetic-interactions
  Language:R 15

• felicityallen / JACKS

  Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

  crisprcrispr-cas9crispr-analysisgenome-wide-databioinformatics
  Language:Python 14

• crisprVerse / crisprScore

  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

  bioconductorbioconductor-packagecrisprcrispr-cas9crispr-designcrispr-targetgenomicsgrnagrna-sequencegrna-sequencesscoring-algorithmsgrnasgrna-design
  Language:Python 13

• Goosang-Yu / genet

  Python library for genome editing, CRISPR gRNA design and prediction

  bioinformaticscrisprgenomepythonaideep-learning
  Language:Python 13

• pritykinlab / guidescan-cli

  A gRNA database generation tool.

  bioinformaticsbioinformatics-pipelinebioinformatics-toolbiologycomputational-biologycppcrisprcrispr-cas9crispr-designgrna
  Language:C++ 12

• BIMSBbioinfo / crispr_DART

  A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

  bioconductorcrisprcrispr-analysiscrispr-cas9indelspythonrrmarkdownsnakemake-workflows
  Language:R 10

• crisprVerse / crisprVerse

  Collection of R packages that work in harmony for CRISPR gRNA design

  crisprcrispr-analysiscrispr-designcrispr-targetgrnagrna-sequencegrna-sequences
  Language:R 10

• crisprVerse / Tutorials

  Tutorials for the crisprVerse

  bowtiecas12acas13crisprcrispr-analysiscrispr-cascrispr-designcrispr-targetgenome-analysisgrnagrna-sequencegrna-sequences
  Language:TeX 10

• EmanuelGoncalves / crispy

  Python module to analyse CRISPR-based libraries

  pythoncrisprsklearngaussian
  Language:Python 10

• tdseher / addtag-project

  CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

  crisprdnafastagffcas9cpf1genomesgrnapcrcrispr-cas9crispr-analysiscrispr-target
  Language:Python 10

• bmds-lab / Crackling

  CRISPR, faster, better – The Crackling method for whole-genome target detection

  crisprcrispr-designcrispr-analysisefficacyspecificityisslbioinformatics
  Language:C++ 9

• cabbi-bio / CROPSR

  CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

  machine-learninggenomicspython3crispr
  Language:Python 8

• H2muller / CROPSR

  CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

  crisprgenomicsmachine-learningpython3
  Language:Python 8

• noamteyssier / sgcount

  A flexible and fast sgRNA counter from FASTQ Files

  bioinformaticscrisprsgrna
  Language:Rust 8
• crispr-bean

  pinellolab / crispr-bean

  Activity-normalized variant effect size estimation from pooled CRISPR screens

  base-editingcrisprscreencount-data-modelingngs-sequencing-databayesian-networkprobabilistic-programming-language
  Language:Python 8

• schmidt73 / guidescan-web

  A guideRNA design tool for the modern era.

  clojurecomputational-biologybiologycrisprcrispr-cas9crispr-designcrispr-cascancer-genomicsbioinformaticsbioinformatics-tool
  Language:Clojure 8

• EmanuelGoncalves / dtrace

  Integration of pharmacological and drop-out CRISPR-Cas9 screens

  crisprdrug-targetsbioinformatics
  Language:Jupyter Notebook 7

• fbaumdicker / SpacerPlacer

  ancestral reconstruction and likelihood analysis for CRISPR spacer arrays

  ancestral-inferencecrispr
  Language:Python 7