There are 1 repository under salmon topic.
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Differential expression and allelic analysis, nonparametric statistics
A salmon plugin for WordPress
CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.
Code for smooth interactions with the salvage database
연어봇 - SalmonBot
Development site for an integrated population model for Auke Creek coho salmon
Spawner and fraction wild data for the NWFSC Status Reviews.
Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC
Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Density of juvenile salmon in Caithness rivers - R-shiny dashboard
an unfinished game I worked on for my Distributed Computing class in high school
Datasets and related knowledge from the IYS Salmon Status and Trends workshops
docker file for genomic tools
This is an R package that runs the standardized trends metrics used in the 5-year Viability Reports for listed PNW salmonids.
A dashboard visualizing Chinook salmon returns to the Fraser and Columbia Rivers and Southern Resident killer whales occurrence
Data from a longterm sea lice monitoring in the Broughton Archipelago, British Columbia, Canada by Alexandra Morton (Raincoast Research) and the Salmon Coast Field Station (salmoncoast.org)
Snakemake workflow for Salmon quantification and FastQC quality controls