crispr-target
There are 1 repository under crispr-target topic.
sigven / oncoEnrichR
Cancer-dedicated gene set interpretation
cancerhigh-throughput-screeningtcga-datareport-generatorprotein-protein-interactionco-expressiondisease-gene-associationcrispr-targetproteinsgenesetsprioritizationprotein-complexescancer-survivalfunctional-enrichment-analysistissue-enrichment-analysispathway-enrichment-analysiscancer-hallmark-evidenceLanguage:R 48crisprVerse / crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Language:R 15Collection of R packages that work in harmony for CRISPR gRNA design
Language:R 10Tutorials for the crisprVerse
Language:TeX 10tdseher / addtag-project
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Language:Python 10On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Language:Python 9akikuno / DAJIN2
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
Language:Python 4- Language:Perl 4
Useful human and mouse data for the crisprVerse ecosystem
Language:R 4- Language:Python 3
Base functions and classes for CRISPR gRNA design
Language:R 2Bowtie-based alignment of CRISPR gRNA spacer sequences
Language:R 1BWA-based alignment of CRISPR gRNA spacer sequences
Language:R 1milescsmith / Azimuth
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
Language:Python 1parthspatel / CRISPR-Cas9-Excision-Therapy-Suitability
CRISPR-Cas9 Excision Therapy Suitability
Language:Python 0WilderLavington / Masters-Thesis-Research-Project
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
Language:MATLAB 0Pre-trained models for the crisprScore package
Language:R- Language:R
