Steven Wingett's repositories
FastQ-Screen
Detecting contamination in NGS data and multi-species analysis
LifeSciencesTrainingDatasets
A collection of datasets and accompanying scripts for learning how to analyse data
data-analysis-with-python-course
This course is intended for people who want to learn how to analyse data programmatically
CeersPower
Java GUI analysis tool
Cell-Differentiation-Classifier
A logistic regression workflow that takes RNA-seq data to assess the differentiation potential of a cell line
bioconda-recipes
Conda recipes for the bioconda channel.
lmb-nextflow
Configuration files and other information regarding the Nextflow setup at the LMB
WashU-Pipe
Pipeline to prepare Hi-C data for the WashU Epigenome Browser
compter
An application to graphically summarise kmer enrichment in a set of sequences
cut_and_run
These are collected scripts that constitute a pipeline to analyse Cut and Run / Cut and Tag datasets. The scripts have been taken from the tutorial put together by Ye Zheng, Kami Ahmad and Steven Henikoff. The scripts have been modified to facilitate processing.
docker-lamp
A simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image
just-the-docs
A modern, high customizable, responsive Jekyll theme for documention with built-in search.
Labrador
A web based tool to manage and automate the processing of publicly available datasets.
Lava
zero-interpolation approach to performing pairwise differential abundance analysis on large, multi-condition, multi-replicate proteomics datasets that are spattered with missing values
nextflow_pipelines
The set of NGS processing pipelines used at Babraham
running_ngs_pipelines_course
Course detailing how to run NGS bioinformatics pipelines using Nextflow on the LMB compute cluster
SeqMonk
SeqMonk NGS visualisation and analysis tool
Structure-Indentity
The project uses snRNAseq and Molecular Cartography to investigate the relation between morphology and molecular identity in brain organoids.