apeltzer

CircularMapper

A method to improve mappings on circular genomes, using the BWA mapper

DeDup

A merged read deduplication tool capable to perform merged read deduplication on single end data.

ClipAndMerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

eager2-paper

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nf-co.re

Files for the main nf-core website >>>

116117bot

A proof of concept bot, checking impfterminservice.de for available COVID-19 vaccination appointments.

bioconda-recipes

Conda recipes for the bioconda channel.

DamageProfiler

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

docudigger

Website scraper for getting invoices automagically as pdf (useful for taxes or DMS)

eager

A fully reproducible and state of the art ancient DNA analysis pipeline.

fusion-report

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

grocy

ERP beyond your fridge - grocy is a web-based self-hosted groceries & household management solution for your home

kleinanzeigen-bot

A dilligent command line tool to publish ads on ebay-kleinanzeigen.de

Mastodon-Bioinformatics

Most simple webapp to bulk follow bioinformatics accounts on Mastodon.

mirdata

Files needed for miRComb package

MTNucRatioCalculator

A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file.

multi-package-containers

Testing building mulled containers for multi-requirement tools.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

nf-core-adr

Structurizr documentation of nf-core

r-mrgsolve-feedstock

A conda-smithy repository for r-mrgsolve.

r-nacho-feedstock

A conda-smithy repository for r-nacho.

SnpEff

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

starter-academic

🎓 Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify

testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

tldr

:books: Simplified and community-driven man pages

vaccipy

Automatische Terminbuchung für den Corona Impfterminservice.

whisperX

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)