vep

There are 0 repository under vep topic.

• mskcc / vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  vcfmafperlvepisoforms
  Language:Perl 363

• ding-lab / CharGer

  Characterization of Germline variants

  diseasesgermline-variantspathogenicityvariantscharacterizationannotationsclinvarvepexacacmgclinicalpathogenic-variantsbioinformaticsgnomad
  Language:Python 95

• sigven / gvanno

  Generic human DNA variant annotation pipeline

  dockergenevepvcfannogermlinevariant-annotationsvcfsnvindelsannotation-frameworkannotation-toolworkflowsingularitysnvsvariantsdisease-gene-association
  Language:Python 53

• SoloEdward / HgvsGo

  HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations (SNVs) and small insertions/deletions (indels) after variant calling. It serves as an alternative to tools like snpEff and VEP.

  hgvsvepsnpeffpanelvariantbioinformaticsivdldt
  Language:C++ 17

• neuroergoISAE / FlickersOnTop

  C# program to superpose SSVEP and c-VEP flickers on top of other graphical interfaces

  bcic-vepcvepguipsychopy3psychtoolboxssvepvep
  Language:C# 10

• renatopuga / somatico

  GATK 4 Mutect2 Somático

  gatk4mutect2ponsomatic-variantsgitpodcolab-notebookhg19normaltumorvep
  Language:Shell 7

• CERC-Genomic-Medicine / vep_pipeline

  Pipeline for variant annotation using Variant Effect Predictor (VEP)

  geneticsvariant-annotationpipelineannotationsvariantnextflowvep-annotationgwasvariant-effect-predictionvep
  Language:Jupyter Notebook 4

• ahtolee / GazeBasedEpochSelection

  Gaze data -based epoch selection algorithm for eye tracker assisted visual evoked potential paradigm

  eyetrackereegepochssegmentationeprimetobii-eye-trackergazevepgaze-dataepoch-selection-algorithmssvep
  Language:MATLAB 3

• CarolinaPB / population-structural-var-calling-smoove

  population structural variant calling with smoove

  bioinformaticspipelinesnakemakesnakemake-pipelinestructural-variationstructural-variation-callingsmoovevepplinksurvivor
  Language:Python 3

• lungetech / co-discovery

  ctfvep
  Language:Python 3

• stevekm / vep-annotation-nf

  variant annotation workflow with VEP

  vcfannotationvepnextflow
  Language:Nextflow 3

• calipho-sib / VEP-community-tool

  VEP Community Tool to visualise VEP data using neXtProt tools.

  nextprotvepvep-pluginbioinformaticsbioinformatics-toolensembl
  Language:TypeScript 1
• attys-ep

  glasgowneuro / attys-ep

  Visually evoked potentials and P300 for the Attys (Windows/Linux)

  physiologymedicinedata-acquisitionattys-epqwtqmakeqt5linuxwindowsmacosmacosxp300vep
  Language:C++ 1

• lvn3668 / variantAnnotation

  Variant annotation of vcf file using exac and vep

  vepexacvcfannotationpython3
  Language:Python 1

• pughlab / cbio_import_utils

  annotationsvcf-formatvepvcf2maf
  Language:Python 1

• renatopuga / exoma-de-rato

  Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4

  bioinformaticsexomerattus-norvegicusbwagatk4vepannotationseducation
  Language:HTML 1

• zek12 / NGS_scripts

  bashgatkveppyvcfngs-pipelinepython
  Language:Shell 1

• deeprob / glannot

  Girirajan Lab VCF file annotation pipeline

  veplofteevcf-annotationvep-annotation-pipelinevep-dockervep-singularityvep-slurm
  Language:Shell 0

• GiovannaPrezia / vcf-somatico

  Anotação de VCF somático utilizando a ferramenta VEP ensembl 105 desenvolvido para tarefa avaliativa

  ensemblvcfvep
  0

• kxdxzr / Ear_EEG_Verification

  For ear EEG testing and verifying

  ear-eegeegeeg-signalsassrmmnn100p300vepalpha-modulationp400
  Language:Python 0

• lm-ut / CADD_summary

  Python script providing summary of CADD scores conditioned on several options

  caddpythonvep
  Language:Python 0

• NGeneBio-Genomics-Platform / pcgr

  Personal Cancer Genome Reporter (PCGR)

  cancergenomicstierciviccgivepcosmic
  Language:R 0

• PittGenomics / postVEP

  The python package helps you analyze Variant Effect Predictor (VEP) result.

  vep
  Language:Jupyter Notebook 0

• JesusMonti / Deteccion-Parpadeo-2

  En este programa se realice la detección del parpadeo por medio del algoritmo de Viola-Jones. Esto programa se realiza como un soporte para un sistema de adquisición de señales EEG, para la obtención de la señal mfVEP. El programa se encarga de detectar cuando la persona realiza un parpadeo, al detectar el mismo se encarga de mandar un trigger al sistema de adquisición de datos para poder tener un control de en que momento se realizo el parpadeo y poder descarta esa fragmento de la señal en la etapa de preprocesado.

  viola-jonesvep
  Language:MATLAB