annovar

There are 1 repository under annovar topic.

• patidarr / ngs_pipeline

  Exome/Capture/RNASeq Pipeline Implementation using snakemake

  pipelinengs-pipelinesnakemakeannovarexomepanelrnaseqngssnpefftophatgatkfastq
  Language:Python 45

• clindet / anor

  anor: an annotation and visualization system based on R and Shiny framework

  annotationsannovarr
  Language:R 32

• mazzalab-ieo / renovo

  Clinical machine-learning based interpreter of germline mutations.

  rf-modelannovarrandom-forestbioinformaticsvariantsvariant-annotations
  Language:Python 8

• ryuzheng / clinvar_db_for_annovar

  automatic update Clinvar db for ANNOVAR

  clinvarannovar
  6

• bioinfo-chru-strasbourg / howard

  Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery

  geneticvariationsannotationvcfannovarsnpeffduckdbparquetprioritization
  Language:Python 5

• stevekm / annotate-peaks

  Scripts for .bed file genomic region annotation with various tools

  biomartgenomepeaksannotationannovar
  Language:R 5

• geniusphil / 2018GenomicsEpidemiologyWorkshop

  2018 Genomic Epidemiology Workshop at Academia Sinica

  annovaracademia-sinicagenomicsepidemiology
  Language:Perl 2

• das2000sidd / Bionformatics-related-scripts

  annotationannovarpython-scriptvcfucsc-downloadsplink-files
  Language:Python 1

• geniusphil / 2016GenomicsEpidemiologyWorkshop

  2016 Genomics Epidemiology Workshop

  annovargenomicsepidemiologyacademia-sinica
  Language:Shell 1

• gustaveroussy / wes-snp-bwa-mutect2-annovar

  Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

  wessnpbwamutect2annovar
  1

• jianhuig / Integrate-gwas

  annovarcaddeigen-scorefunctional-annotations-scoresgwas
  Language:R 1

• suqingdong / pyannovar

  annotationannovarpythonvcf
  Language:Shell 1

• daaaaande / bionanotator

  bionano annovar annotation

  annovarbedtoolsbionanostructural-variationsv-annotation
  Language:Perl 0

• geniusphil / 2017GenomicsEpidemiologyWorkshop

  2017 Genomics Epidemiology Workshop at Academia Sinica

  annovaracademia-sinicagenomicsepidemiology
  Language:Perl 0

• shanghungshih / indelConverter

  tool for converting between dash and non-dash INDEL format using docker

  annovargenomicsngsvcfvcf-converter
  Language:Python 0