grna

There are 0 repository under grna topic.

crisprVerse / crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics-analysis grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 22
crisprVerse / crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics grna grna-sequence grna-sequences scoring-algorithm sgrna sgrna-design
Language:Python 16
pritykinlab / guidescan-cli
a guideRNA database generation tool
bioinformatics bioinformatics-pipeline bioinformatics-tool biology computational-biology cpp crispr crispr-cas9 crispr-design grna
Language:C++ 16
crisprVerse / crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
crispr crispr-analysis crispr-design crispr-target grna grna-sequence grna-sequences
Language:R 14
crisprVerse / Tutorials
Tutorials for the crisprVerse
bowtie cas12a cas13 crispr crispr-analysis crispr-cas crispr-design crispr-target genome-analysis grna grna-sequence grna-sequences
Language:TeX 13
crisprVerse / crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
bioconductor bioconductor-package crispr crispr-analysis crispr-design grna grna-sequence grna-sequences sgrna sgrna-design visualization
Language:R 9
CansuDincer / BEstimate
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
base-editors genome-editing grna protein-interaction vep-annotation
Language:Python 7
dashit
czbiohub-sf / dashit
Automatically create CRISPR guides for DASH :scissors:
bioinformatics crispr-cas9 cas9 grna
Language:Python 6
crisprVerse / crisprBase
Base functions and classes for CRISPR gRNA design
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences rpackage
Language:R 5
crisprVerse / crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 5
SubGlitch1 / GuideRNA_Designer
CRISPR Guide RNA Designer
bioinformatics crispr crispr-cas9 crispr-design grna
Language:Python 5
bretonics / CHOMP
Search guide-RNA sequences given a genome or gene sequence
crispr crispr-target bioinformatics crispr-analysis grna grna-sequence
Language:Perl 4
crisprVerse / crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bowtie crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 3
crisprVerse / crisprScoreData
Pre-trained models for the crisprScore package
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences scoring-models sgrna sgrna-design
Language:R 2
ArmaanAhmed22 / gRNA_create
Tool to design gRNAs
bioinformatics grna computational-biology microbiology broad-spectrum
Language:HTML 1
crisprVerse / crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bwa crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 1
igemsoftware2020 / GunnVistaPingry_US
The code for GunnVistaPingry_US's Odigos Project
crispr genome grna
Language:HTML 1