There are 8 repositories under snps topic.
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
Find causal cell-types underlying complex trait genetics
A fast 23andMe genome text file parser, now superseded by arv
Datastructures and algorithms for working with genetic variation
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
A tool for simulating random mutations in any genome
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Collection of Python scripts for parsing/analyses of RAD-seq data
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons :microbe:
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
Scripts for file processing and analysis in phylogenetics and phylogeography
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Visualize microbial evolution at the SNP level!
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)