grna-sequence

There are 0 repository under grna-sequence topic.

crisprVerse / crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics-analysis grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 16
crisprVerse / crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics grna grna-sequence grna-sequences scoring-algorithm sgrna sgrna-design
Language:Python 12
crisprVerse / crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
crispr crispr-analysis crispr-design crispr-target grna grna-sequence grna-sequences
Language:R 10
crisprVerse / Tutorials
Tutorials for the crisprVerse
bowtie cas12a cas13 crispr crispr-analysis crispr-cas crispr-design crispr-target genome-analysis grna grna-sequence grna-sequences
Language:TeX 10
bretonics / CHOMP
Search guide-RNA sequences given a genome or gene sequence
crispr crispr-target bioinformatics crispr-analysis grna grna-sequence
Language:Perl 4
crisprVerse / crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 4
crisprVerse / crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
bioconductor bioconductor-package crispr crispr-analysis crispr-design grna grna-sequence grna-sequences sgrna sgrna-design visualization
Language:R 4
SciGrade
AlexJSully / SciGrade
SciGrade is an online web-tool that allows students (or any user with access) to mark and assist in gRNA+Primer generation.
scigrade science education crispr grna-sequence bioinformatics pedagogy uoft maintenance-mode
Language:JavaScript 2
crisprVerse / crisprBase
Base functions and classes for CRISPR gRNA design
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences rpackage
Language:R 2
crisprVerse / crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bowtie crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 1
crisprVerse / crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bwa crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 1
amatur / CRISPR-nRef-gRNA-Design
crispr computational-biology k-mer-counting alignment-free grna-sequence candidate-selection
Language:Shell 0
crisprVerse / crisprScoreData
Pre-trained models for the crisprScore package
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences scoring-models sgrna sgrna-design
Language:R