pileup

There are 0 repository under pileup topic.

• coolpuppy

  open2c / coolpuppy

  A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

  bioinformaticscontact-matrixgenomicshi-cpileuppythonsparse-matrix
  Language:Python 72

• Koeng101 / dnadesign

  A Go package for designing DNA.

  bioinformaticscodon-optimizationcodon-usagecomputational-biologydna-barcodedna-foldingfastafastqgenbankgenetic-engineeringgogoldengatemolecular-biologypileupplasmidsrna-foldingsamsynbiosynthetic-biology
  Language:Go 20

• magnitov / pentad

  A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.

  hi-ccompartmentspileup
  Language:Python 12

• edgardomortiz / sam2consensus

  Get the consensus sequences from SAM (and BAM) files, ignoring the reference

  samconsensusfastareference-freebampileup
  Language:Python 10

• CLIMB-COVID / maptide

  Base frequencies for BAM files.

  base-frequencybioinformaticspileup
  Language:Rust 4

• TC-Hewitt / MuTrigo

  Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).

  fastampileupmutantngsngs-analysisngs-pipelinepileuppythonpython3samtoolssnpsnpssnv
  Language:Python 3

• celalp / parse_pileup

  Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

  pileupheteroplasmysamtoolsbwa
  Language:Python 1

• lvn3668 / pileupnotationvariantcaller

  Variant caller from pileup notation / samtools alignment

  pileuppythonpython3samtools
  Language:Python 1

• wennj / pileupReformater

  Convert output from Samtools pileup into a matrix.

  linkagematrixnanopore-sequencingnucleotidespileupsamtoolssnpsnv
  Language:Java 0

• ogty / pile-up-cardboard-boxes

  📦 Pile up cardboard boxes 📦

  pileupsvgtypescript
  Language:TypeScript