There are 0 repository under pileup topic.
A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
Variant caller from pileup notation / samtools alignment
Convert output from Samtools pileup into a matrix.
PYTHIA files for simulating pp collisions at LHC energies with pileup