mutect2

There are 0 repository under mutect2 topic.

• TRON-Bioinformatics / tronflow-mutect2

  Nextflow pipeline for Mutect2 somatic variant calling best practices

  mutect2nextflowtronflowbioinformatics
  Language:Nextflow 18

• databricks / genomics-pipelines

  secondary analysis pipelines parallelized with apache spark

  genomicsgatkbwastarmutect2
  Language:Scala 15

• renatopuga / somatico

  GATK 4 Mutect2 Somático

  gatk4mutect2ponsomatic-variantsgitpodcolab-notebookhg19normaltumorvep
  Language:Shell 7

• nickveltmaat / SNVcaller

  Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

  somatic-variantssomatic-mutationssnvssnvsnv-annotationcell-free-dnactdnacfdnalofreqmutect2vardictsinvictindel
  Language:Python 3

• SherineAwad / SomaticMutations

  This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

  somaticmutationssnakemakemutect2gatk4
  Language:Python 3
• phdscripts

  asw0049 / phdscripts

  This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

  bash-scriptingbioinformaticsbioinformatics-pipelineggplot2scriptssnpssnvstemperaturebwa-memmitochondriamitochondrial-genomesmitochondrial-variantsmutect2samtoolsawkawk-script
  Language:Shell 1

• gustaveroussy / wes-snp-bwa-mutect2-annovar

  Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

  wessnpbwamutect2annovar
  1

• tdayris / fair_gatk_mutect2

  Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

  fairgatk-bestpracticesmutect2reproducible-workflowssnakemakesnakemake-workflowvariant-calling
  Language:Python 1

• Hanchaeeun / Linux_practice

  유전체 데이터 돌연변이 분석

  linuxmutect2variant-callingsomatic-variant
  Language:Shell 0

• pedricolino / cnakepit

  A Snakemake pipeline for copy number variant calling without normal tissue samples

  bioinformaticsbwacnacnvcnvkitcondacopynumbervariationmutect2panelspurecnsequencing-datasnakemaketargeted-sequencing
  Language:Python

• RRafiee / MuTect1

  gatktoolkitbroadinstitutevcfplotchromosomechromosomesmutect2mutect1
  Language:R

• stevekm / MuTect2_target_chunking

  demo pipeline for testing different data chunking methods for MuTect2

  nextflowmutect2variant-calling
  Language:Nextflow