cram
There are 1 repository under cram topic.
- Language:C 834
- Language:Java 285
divonlan / genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Language:C 164Griffan / VerifyBamID
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Language:mupad 96- Language:Clojure 89
- Language:Python 55
- cram
gregzanch / cram
cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space
Language:TypeScript 47 ncherric / Iliad
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
Language:Python 28- Language:C++ 27
- Language:Python 27
nf-cmgg / structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Language:Nextflow 19A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
Language:Nextflow 8- Language:Nim 6
ag-sc / CRAM-Generation-LLM
Using ChatGPT & GPT-4 to generate CRAM & PyCRAM designators in a one-shot fashion
Language:Python 4beling / impartial-games
Rust software for solving impartial games.
Language:Rust 4- Language:Rust 4
Computational-Genomics-BSC / GenomeMosaicMaker
Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).
Language:Python 1Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
Language:Python 1machinekoder / Fabrikator-Mini-CRAMPS
Machinekit configuration for the Fabrikator Mini + CRAMPS board
Language:Python 1maurya-anand / getBamDepth
A script to report depth of coverage from BAM/SAM/CRAM file or parse the output generated from "samtools depth"
Language:Perl 1- Language:Python 1
- Language:Go
nikolausschueler / tapconverters
Convert output from Cram (and some other tools) to TAP (Test Anything Protocol)
Language:Python
