crisprVerse

crisprDesign

Comprehensive design of CRISPR gRNAs for nucleases and base editors

crisprScore

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

crisprVerse

Collection of R packages that work in harmony for CRISPR gRNA design

Tutorials

Tutorials for the crisprVerse

crisprDesignData

Useful human and mouse data for the crisprVerse ecosystem

crisprViz

Visualization of CRISPR guide RNAs (gRNAs)

screenCounter

Get barcode counts from functional genomics screens

crisprBase

Base functions and classes for CRISPR gRNA design

crisprVersePaper

Manuscript and analyses for crisprVerse manuscript

crisprBowtie

Bowtie-based alignment of CRISPR gRNA spacer sequences

crisprBwa

BWA-based alignment of CRISPR gRNA spacer sequences

crisprShiny

Shiny interface for CRISPR gRNAs designed with the crisprVerse

.github

Docker

crisprDesignAux

Auxiliary functions to the crisprDesign package

crisprScoreData

Pre-trained models for the crisprScore package

kaori

C++ library for barcode counting

Rbwa

R wrapper for BWA-backtrack and BWA-MEM aligners