kalilamali

skin_detector

Skin tone detector that uses the individual topology angle (ITA).

Decision-support-in-dermatology

Scripts used in "Deep learning for decision support in dermatology". This work was presented as a M. Sc. Thesis for the Technical University of Denmark (DTU).

bacteria_analyzer

Interactive program for handling data related to growth rates of different bacteria at different temperatures.

foodex2_code_meaning

An online or local app that takes an EFSA FoodEx2 code and returns its meaning.

ISIC_2019_Machine_learning_for_Dermatology

This work was presented in a poster session as oral examination for DTU's course 02456 Deep learning.

SARS-CoV-2_Illumina_pipeline

Step-by-step approach in the analysis of SARS-CoV-2 cDNA from raw reads using fastqc, trimmomatic, bwa, vcftools.

SKINdx

A local app that runs in your browser based on a deep learning system that can classify an image in 2 ways: Binary classification of skin vs. non-skin. 304 disease categories.

approval_tests_python_demo

This is a demo repo for testing in python using ApprovalTests.Python

atlassian_coursera_version_control_with_git

This is the final project for the atlassian coursera version control with git course.

bioweb_image_getter

This program gets Amphibia images from BIOWEB given a list with species names.

codespaces-demo

This is a demo repo for CI and CD using GitHub codespaces and GitHub actions.

conda_ci_github_actions_demo

This is a demo repo for CI and CD for conda environments using GitHub actions.

Dermatology

Machine learning experiments focus on skin lesions

drawio_github_demo

This a demo repo for diagrams in GitHub using draw.io

hugoforduke17

This is a sample hugo website for a duke Class

Integrons

Integron analysis tools. Scripts necessary to reproduce the validation of IntFinder (version 1.0).

duke_coursera_cloud_computing_foundations

This is the first lab for the duke coursera cloud computing foundations.

dukehugofeb1

this is a Hugo continuous delivery site

FishDNA_pipeline

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Flask-Elastic-Beanstalk

gcp-flask-ml-deploy

This is a project to auto-deploy with an ML payload

github-actions-demo

This is a repo for building out Github Actions and Tricks

isic_2019

Skin lesion classifier for the ISIC 2019 challenge using Python and PyTorch.

kalilamali

kmodes_cluster_visualization

Get kmodes clusters from an excel sheet with data and visualize them as nested donut plots.

microbeseq_nbdev_augment

Files to assist in setup of nbdev

scaffold

This is a project scaffold for Python

simple-skin-detection

Skin tone estimation and segmentation in MATLAB and OpenCV

ucm_genomes_and_genome_analysis

R code in R Markdown used for ucm genomes and genome analysis course

Whole_genome_sequencing_analysis

Whole genome sequencing (WGS) was combined with bioinformatics tools to investigate the epidemiology of Vibrio cholerae in the Philippines and in other cholera affected countries.