bbmap

There are 0 repository under bbmap topic.

• Juke34 / AliNe

  Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

  bowtie2bwahisat2minimap2nextflownucmerstargraphmap2bbmapbowtiekallistongmlrnovoalignsubreadbwa-swsublongbmw-mem2salmonstarlonglast
  Language:Nextflow 20

• erikrikarddaniel / magmap

  Nextflow (nf-core) workflow for mapping reads to large collections of genomes.

  nextflownf-corebbmapmetagenomicsmetatranscriptomics
  Language:Nextflow 1

• MaxGreil / sradcqc

  Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow

  sra-toolkitpipelinenextflowsrafastqdockerquality-controlbbmapbioinformatics
  Language:Nextflow 0

• SherineAwad / BulkRNASeq

  Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

  edgerbbmaprnaseqsnakemake-workflowssalmontximportfeature-counts
  Language:R 0