dna-sequencing

There are 1 repository under dna-sequencing topic.

DNAnalyzer
VerisimilitudeX / DNAnalyzer
Precision genomics for everyone, everywhere. Powered by private AI.
bioinformatics dna-sequencing regulatory-elements genomics artificial-intelligence machine-learning computational-biology biotechnology cli dna-analysis fasta on-device open-source precision-medicine privacy
Language:HTML 161
bioinformatics-centre / BayesTyper
A method for variant graph genotyping based on exact alignment of k-mers
bayesian-inference dna-sequencing genotyping gibbs-sampling indels k-mers ngs snvs structural-variation variant-calling variant-graphs
Language:C++ 86
stuckinaboot / iGenomics
The first app for Mobile DNA Sequence Alignment and Analysis
dna-sequencing genomes nanopore-sequencing ios obj-c dropbox
Language:C 37
polyRAD
lvclark / polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
bioinformatics r dna-sequencing genotyping-by-sequencing genotype-likelihoods rad-seq rad-sequencing snp-genotyping hacktoberfest
Language:HTML 29
Nazeeefa / awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
nanopore pacbio illumina genomics sequencing bioinformatics sequence-alignment genome-sequencing dna-sequencing awesome-list human-genomes hifi long-read-sequencing illumina-sequencing
27
Sentieon / sentieon-dnaseq
Sentieon DNAseq
dna-sequencing variant-calling bioinformatics-pipeline sentieon dnaseq genomics-data bwa-mem acceleration gatk gatk4
Language:Shell 22
bioinfologics / Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
dna-sequences genome-assembly dna-sequencing simulation simulator dna-assembly paired-end long-reads linked-reads
Language:Julia 13
Melanee-Melanee / Melanee-Deployments
Deployed medical apps on streamlit
data-science deplyment machine-learning streamlit diabetes-prediction dna-sequencing heart-disease-prediction
Language:Python 11
czmilanna / nanoforms
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
ngs bioinformatics oxford-nanopore genomics webserver dna-sequencing dna-assembly microbial-genomes
Language:JavaScript 10
linsalrob / primer-trimming
Fast C code for identifying and removing primers and adapters
bioinformatics dna-sequences dna-sequencing
Language:C 10
kaist-ina / RUN-DVC
Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning
deep-learning domain-adaptation generalization long-read-sequencing ngs semi-supervised-learning variant-calling bioinformatics dna-sequencing transfer-learning genomics
Language:Python 9
ajitsingh98 / DNA-Classification-Machine-Learning-Project
Classify DNA sequence into Binary class using different Classification algorithms.
dna-sequences dna dna-sequencing classification-algorithm machine-learning python scikit-learn
Language:Jupyter Notebook 8
Tom-Jenkins / nextflow-pipelines
Scripts for bioinformatics analysis of sequencing data
bioinformatics dna-sequencing nextflow
Language:Nextflow 8
mframpton / seqfam
A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.
python3 python bioinformatics dna-sequencing pedigree-information mapreduce gene-burden gene-drop kinship
Language:Python 7
mframpton / ArtificialFastqGenerator
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
bioinformatics bioinformatics-pipeline fastq-files dna-sequencing quality-control
6
mitjafelicijan / dna-encoding
Tools for encoding files to DNA sequence
dna dna-sequencing
Language:Go 6
shashwatkathuria / Data-Structures-And-Algorithms
Data Structures And Algorithms
data-structures algorithm algorithms heap hashtable dna-sequencing binary-search-tree binary-search stack arraylist trie kruskals-algorithm prims-algorithm papadimitriou travelling-salesman-problem bellman-ford-algorithm dijkstra-algorithm shortest-paths sorting-algorithms dynamic-programming
Language:Python 6
M-Taghizadeh / BigData_Projects
Projects related to Big Data course will be implemented in this repository.
big-data computer-vision fake-news-detection image-captioning machine-learning transformer vision-transformer dna-sequencing
Language:Jupyter Notebook 5
cgdsoftware / laravel-dna
Package to parse DNA kit files, and import them into Laravel
dna dna-processing dna-sequencing php php-library php8
Language:PHP 4
GZHoffie / bucket-map
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
short-read-mapping dna-sequencing
Language:C++ 4
anasrana / spector
R-package to analyse and quantify aberrations in DNA-sequencing data
r-package genomics sequencing dna-sequencing wgs-data whole-genome-sequencing
Language:R 3
BrainTwister / GeneHunter
Identification of organisms from a stream of DNA sequences
dna-sequencing genome-analysis
Language:C++ 3
gear-genomics / bgen
Barcode Generator
gear-genomics dna dna-sequences dna-sequencing dna-barcode genomics high-throughput-sequencing
Language:JavaScript 3
xenomapper2
genomematt / xenomapper2
A utility for splitting mixed origin NGS reads with secondary or alt mappings
bioinformatics genomic-data-analysis dna-sequencing alignment xenografts mhc rna-seq
Language:Python 3
wilsontelab / svx-mdi-tools
MDI pipelines and apps for genome structural variant analysis by different library strategies
bioinformatics dna-sequencing structural-variant
Language:R 3
auroramaurizio / my_DNA_seq_pipelines
In this repository I backup the pipelines I write for the project I am involved
cnv contamination-detection dna-sequencing snv tas wes wgs plots vaf variant-calling purity structural-variants
Language:Python 2
cchuenchoksan / PicklSeq
A python command line tool to turn a fastq and fasta to pickle files for ML or other analysis on python.
dna-sequencing genomics illumina oxford-nanopore
Language:Python 2
Landrylab / Evans-Yamamoto_et_al_2021
Jupyter notebooks for BFG-PCA related simulation and analysis.
synthetic-biology systems-biology protein-protein-interaction dna-sequencing dna-barcode barcode-fusion-genetics
Language:Python 2
leifursteinn / DNAandRNATranslation
Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.
biology dna-sequencing rna-sequencing
Language:Python 2
mariamz12 / TCGA-Pancreatic-carcinoma-workflow
gene expression survival-analysis tcgabiolinks tcga-pancan dna-methylation r cluster-analysis ensamble limma-voom dna-sequencing illumina
2
MatanBudimir / dna-sequence-converter
DNA Sequence Converter made in Go
go dna dna-sequences dna-sequencing
Language:Go 2
Mathieu2301 / Projet-BioInfo
bioinformatics dna-sequences dna-sequencing dna-processing dna-alignment
Language:Shell 2
ozankiratli / DNA-Alignment-Pipeline
This is a script to align DNA sequences and do variant calling. (mtDNA working - poolseq under development)
dna dna-sequencing
Language:Shell 2
vaniseth / DNA-Classifier-and-Comparator
Testing DNA sequences against various classification allgorithms
artificial-intelligence bioinformatics classification-algorithims comparison dna-sequencing machine-learning
Language:Jupyter Notebook 2
visheshsinha / DNA-Sequencing
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
dna sequencing exact-matcching pattern-matching z-algorithm k-mer-counting k-mers pigeonhole dna-sequencing reference-genome
Language:Jupyter Notebook 2
KavyaBanerj / WES-Variant-Calling
Shell workflow designed to process Whole Exome Sequencing (WES) data following GATK4 best practices for variant calling.
dna-sequencing variant-calling
Language:HTML 1

dna-sequencing

VerisimilitudeX / DNAnalyzer

bioinformatics-centre / BayesTyper

stuckinaboot / iGenomics

lvclark / polyRAD

Nazeeefa / awesome-sequencing-tech-papers

Sentieon / sentieon-dnaseq

bioinfologics / Pseudoseq.jl

Melanee-Melanee / Melanee-Deployments

czmilanna / nanoforms

linsalrob / primer-trimming

kaist-ina / RUN-DVC

ajitsingh98 / DNA-Classification-Machine-Learning-Project

Tom-Jenkins / nextflow-pipelines

mframpton / seqfam

mframpton / ArtificialFastqGenerator

mitjafelicijan / dna-encoding

shashwatkathuria / Data-Structures-And-Algorithms

M-Taghizadeh / BigData_Projects

cgdsoftware / laravel-dna

GZHoffie / bucket-map

anasrana / spector

BrainTwister / GeneHunter

gear-genomics / bgen

genomematt / xenomapper2

wilsontelab / svx-mdi-tools

auroramaurizio / my_DNA_seq_pipelines

cchuenchoksan / PicklSeq

Landrylab / Evans-Yamamoto_et_al_2021

leifursteinn / DNAandRNATranslation

mariamz12 / TCGA-Pancreatic-carcinoma-workflow

MatanBudimir / dna-sequence-converter

Mathieu2301 / Projet-BioInfo

ozankiratli / DNA-Alignment-Pipeline

vaniseth / DNA-Classifier-and-Comparator

visheshsinha / DNA-Sequencing

KavyaBanerj / WES-Variant-Calling