vcftools

There are 0 repository under vcftools topic.

• davetang / learning_vcf_file

  Learning the Variant Call Format

  bcftoolscall-variantsgatkmulti-sample-vcfvcfvcf-filesvcf-formatvcftools
  Language:Perl 136

• everestial / VCF-Simplify

  A python parser to simplify and build the VCF (Variant Call Format).

  vcfpython-parservariant-annotationhaplotypesphasingconvertsphase-stitcherphase-extendertableviewvcf-filesvcftoolschrom
  Language:Python 45
• gwas-tips

  esohkevin / gwas-tips

  tips and tricks in genome-wide association studies - a tutorial

  gwasgwas-toolsgwas-pipelinegwas-datasetthesissnptestplinkqctoolimpute2shapeit2admixturegenotype-datachromopainterfinestructurevcftools
  13

• genomoncology / using-cyvcf2

  Repository for Blog Article on Parsing with cyvcf2. Article ==>

  bioinformaticsvcftoolscyvcf2
  Language:Python 7

• jdalapicolla / LanGen_pipeline_version2

  Scripts in R for Landscape Genomics Analyses v.2

  genomicslandscapelandscape-genomicsphylogeographypipelinepopulation-genomicsvcfvcftools
  Language:R 7

• superDross / pdVCF

  Allows one to manipulate a VCF as a MultiIndex Pandas DataFrame

  python3pandasvcfvcftoolsgenetics
  Language:Python 5

• ALAPY / AGx

  Variant annotation and filtration server ALAPY Genome Explorer

  ngsvcf-filesvcftoolsvcf-datavariant-annotationsvariant-analysisvcf
  Language:Shell 3

• Aptivi / VisualCard

  A .NET vCard parser with Android contacts2.db and MeCard support

  contactcontactscsharpcsharp-librarydotnetdotnet-coredotnet-frameworklibraryvcfcontact-managementcontact-management-systemcontact-managercontact-manager-apicsharp-codecsharp-liblibrariesvcf-datavcf-filesvcftoolsvcf-5
  Language:C# 2
• ngsUtils

  manojbhosale / ngsUtils

  Useful NGS utilities for everyday use in the form of stand-alone tool.

  vcfngs-analysissnp-variantsdeletion-variantsinsertion-variantsbedtoolsbedgenomicscomputational-biologyinterval-treejavadataanalysisvcftoolsvcf-comparatorvcf-filtering
  Language:Java 2

• mr-eyes / genoFreq

  summarize and visualize the genotypes categories per sample in a VCF file

  vcfvcftoolsgenotypegenotype-databioinformaticsbioinformatics-toolbioinformatics-visualizationvariant-calling
  Language:C++ 2

• rutgerkirkels / vcard-generator

  Vcard generator library for PHP

  vcardvcfvcf-filesvcftoolslibraryphpphp72
  Language:PHP 2

• afreeorange / autozygosity

  A public, web-based homozygosity mapping tool

  pythonflaskvcftoolssamtoolsgatkbedtools
  Language:Python 1

• jdalapicolla / IBD_models.R

  Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

  genomicslandscape-genomicsphylogeographypipelinepopulation-genomicsvcfvcftools
  Language:R 1

• kalilamali / FishDNA_pipeline

  Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

  fastqctrimmomaticncbibwavcftoolsplinkrgenomicsfisheriesusanorwaybash
  1

• M-Osky / VCFiles

  VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already exist in vcftools, but it seems it stopped being updated. so you can use these scripts to do various tasks with them

  genomicsvcfvcf-filesvcftools
  Language:Perl 1

• UofS-Pulse-Binfo / vcf_filter

  Form interface so users can custom filter existing VCF files and export in a variety of formats.

  tripalvcf-filesvcftools
  Language:PHP 1

• abosotaif9 / ContactPro

  Processing text files and converting them into a VCF file form which contacts can be imported to the mobile phone

  codecsfacebookpythonvcf-convertervcf-filesvcftools
  Language:Python 0

• anita-brzoza / university_projects

  The repository contain directories of projects done during the bioinformatics degree program

  fastqcbowtie2data-analysisgatkmultiqcsamtoolstrimmomaticvcftoolsbioinformaticsbioinformatics-pipelinesmith-waterman-algorithm
  Language:HTML 0

• CHRUdeLille / bcftools_containers

  bcftools singularity container

  singularitysingularity-containerssingularity-hubbcftoolsngsnext-generation-sequencingvcfvcftoolshtslib
  Language:Shell 0

• COMBAT-TB / vcf_snps_utils

  Custom command line utility tools to manipulate vcf files

  vcfvcftoolssnpsgalaxy-projectcombact-tb
  Language:Python 0

• eliorav / Biology-Tools

  A docker wrapper for plink

  dockerplinkvcftools
  Language:Dockerfile 0

• iodar / ps-vcf-merger

  Simple tool to merge VCF contacts.

  powershellpowershell-corepowershell-scriptpowershell7pwshvcfvcf-filesvcftools
  Language:PowerShell 0

• zjwinn / TASSEL-VCF-Fixer

  A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate

  genomicstasselvcf-filesvcftools
  Language:Shell 0

• BenbowLab / Benin-NGS

  Example files for Benin NGS capacity building project

  examplephylogeneticsphylogenetic-treetutorialsample-datavcf-filesvcftoolsngs-analysisbenin-ngs
  Language:HTML

• Grelot / reserveBenefit--snpsdata_analysis

  Codes i wrote for the paper "genomic resources for Mediterranean fishes"

  reservebenefitradseqgenomesnpbashrvcftoolsbedtoolssamtoolsbwa-mempython3bcftoolscontainersingularityhtslib
  Language:Shell

• jdalapicolla / MLPE.R

  Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE

  genomicslandscapelandscape-ecologyphylogeographypipelinepopulation-genomicsvcftools
  Language:R

• malte325 / .vcf_Outlook_formator

  A formatter that converts vcf files to Outlook contacts

  outlookps1ps1-scriptvcfvcf-convertervcf-filesvcftools
  Language:PowerShell

• rconfa / PyVCF

  A python parser for vcf bioinformatics file

  pythonvcftoolsvcf-filesbioinformaticspython-parservcfuniversity-projectmilanomilano-bicocca
  Language:Python