prophages

There are 0 repository under prophages topic.

• fmalmeida / bacannot

  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

  annotationantimicrobial-genes-annotationmethylation-annotationko-annotationpipelinevirulence-factorvirulence-genesmobile-genetic-elementsprophagesreproducible-researchgenome-browsergenome-analysisbarrnaprginextflowgenomic-islands-predictionprophage-sequences-predictionphigarorrna-predictioninsertion-sequences
  Language:Nextflow 96

• SushiLab / mVIRs

  prophagesalignmentbwaoprsmetagenomics
  Language:Python 12
• WGCA

  icaromsc / WGCA

  JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

  genomic-islandsprophagesvirulence-genesresistomecomparative-genomicsgenomic-data-analysisbioinformatics-workflowsnakemake
  Language:Python 8

• jlmaier12 / ProActive

  Detect regions of elevated or depressed read coverage in metagenomes or genomes

  bacteriophagelytic-activityphage-activitytemperate-phagemobile-genetic-elementsprophagestransposons
  1

• Strong-Lab / Prophage_in_NTM

  This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

  prophagesmycobacteriumvirulence-factorprophagentmintegrated-prophages
  Language:Jupyter Notebook 1

• camilogarciabotero / PHASTER-DataProcessing-Scripts

  This repo hosts several scripts developed for data processing related to PHASTER outputs that will be included in the manuscript in preparation about Bacillus tequilensis genome

  bacillusprophages
  Language:R