There are 1 repository under plink topic.
A comprehensive tutorial about GWAS and PRS
Fixes and new release. PuTTY Tunnel Manager allows you to easily open tunnels, that are defined in a PuTTY session, from the system tray. You can also move the tunnels from PuTTY to PuTTY Tunnel Manager. This allows you to use PuTTY just for SSH shell sessions (without opening tunnels), and use PuTTY Tunnel Manager just for tunneling.
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
Windows frontend for digging SSH tunnels and creating socks proxies
Automated Tool for Global Screening Array analysis
Setup and starter script for the PLINK R plugin.
Script package to automate waking and playing your PS3 from your (remote) Windows PC
LocusZoom in Jupyter notebooks
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
population structural variant calling with smoove
gwas workflow from raw intensity data to in-silico functional mapping
Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink
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Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.
plinker is a R package to interface PLINK over PLINK BED files.
DNA Imputation tool for Generis.
Bash scripts provided here to run various GWAS QC, Imputation, PCA, and association testing steps using PLINK, SMARTPCA, RStats and Visualization