There are 2 repositories under fm-index topic.
A string library
A fast, AVX2 and ARM Neon accelerated FM index library
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
Burrows-Wheeler Transform and FM-index in golang
Wavelet tree based on a fixed block boosting technique
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Highly optimized genomic resources for GPUs
Dynatrace FM-Index library
Basic seed-and-extend DNA sequence read aligner
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
Splice-aware Tool for Alignment of Pyrosequencing Reads
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
Repository for the master course Genomic IT at the School of Electrical Engineering
Some of my leisure activities.