fm-index
There are 2 repositories under fm-index topic.
- Language:C 1584
- seqan3
seqan / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Language:C++ 423 - Language:C 111
- Language:C++ 106
- Language:C++ 94
andreaferretti / cello
A string library
Language:Nim 79- Language:TeX 70
- Language:C++ 46
TravisWheelerLab / AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
Language:C 31ikegami-yukino / shellinford-python
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
Language:C++ 22shenwei356 / bwt
Burrows-Wheeler Transform and FM-index in golang
Language:Go 20- Language:Rust 19
dominikkempa / faster-minuter
Wavelet tree based on a fixed block boosting technique
Language:C++ 16c0D3M / Suffix-Arrays
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Language:C++ 12dfguan / deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Language:C++ 10dynatrace-oss / index4j
Dynatrace FM-Index library
Language:Java 9ITBE-Lab / seed-evaluation
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Language:Python 6achacond / gem-cutter
Highly optimized genomic resources for GPUs
Language:C 4- Language:Haskell 3
- Language:Python 3
hewillk / aligner
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
Language:C++ 2aleksandarkiridzic / dna-sequence-aligner
Basic seed-and-extend DNA sequence read aligner
Language:C++ 1chusAB / bvSFMindex
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
Language:C 1- Language:C++ 1
- Language:Java 1
fjdf / SpliceTAPyR
Splice-aware Tool for Alignment of Pyrosequencing Reads
Language:C 0kris96tian / bioinfo_tool
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
Language:Python 0maricak / GenomicIT
Repository for the master course Genomic IT at the School of Electrical Engineering
Language:Python 0Superb-Man / Advanced_DSA
Some of my leisure activities.
Language:C++ 0- Language:Go
