sgrna

There are 0 repository under sgrna topic.

keoughkath / AlleleAnalyzer
A software tool for personalized and allele-specific CRISPR editing.
crispr crispr-cas9 sgrna allele-specific-sgrnas
Language:Jupyter Notebook 16
crisprVerse / crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics-analysis grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 15
tdseher / addtag-project
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
crispr dna fasta gff cas9 cpf1 genome sgrna pcr crispr-cas9 crispr-analysis crispr-target
Language:Python 10
crisprVerse / crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
bioconductor bioconductor-package crispr crispr-cas9 crispr-design crispr-target genomics grna grna-sequence grna-sequences scoring-algorithm sgrna sgrna-design
Language:Python 9
noamteyssier / sgcount
A flexible and fast sgRNA counter from FASTQ Files
bioinformatics crispr sgrna
Language:Rust 8
crisprVerse / crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 4
crisprVerse / crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
bioconductor bioconductor-package crispr crispr-analysis crispr-design grna grna-sequence grna-sequences sgrna sgrna-design visualization
Language:R 4
crisprVerse / crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bowtie crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 1
crisprVerse / crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
aligner bioconductor bioconductor-package bwa crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design
Language:R 1
OnlyBelter / sgRNA-lib-QC
QC CRISPR Pooled Libraries in Addgene
sgrna crispr addgene
1
babinyurii / sgRNA-mismatch-activity
predicting sgRNA mismatch activity using keras
crispr sgrna keras-tensorflow keras
Language:Jupyter Notebook 0
lucatorep / sgRNA_design_scripts
Script used to cdesign sgRNA sequences based on desired input parameters comparing different web-based tools
chopchop crispr crispr-cas9 rstudio sgrna sgrna-design crispr-era yeastcrispri
0
crisprVerse / crisprScoreData
Pre-trained models for the crisprScore package
bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences scoring-models sgrna sgrna-design
Language:R
drpatelh / nf-core-sgrnaquant
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
nf-core nextflow workflow crispr crispr-analysis sgrna quantification counting pipeline
Language:Nextflow