tdayris-perso's repositories
rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
vcf-annotate-snpeff-snpsift
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
wes-mapping-bwa-gatk
Map and post-process your bams for SNP calling
bam-msisensor
Detect replication slippage variants at microsatellite regions
rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls
infer-sequencing-libraries
From a given (pair?) of FastQ files for a given sample, infer its strandiness, and other parameters
ngs-cleaning
Trimming and QC on NGS data
sequana
Sequana: a set of Snakemake NGS pipelines
Language:Jupyter NotebookBSD-3-Clause000
slurm
Cookiecutter for snakemake slurm profile
Language:PythonMIT000
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Pep8000