There are 0 repository under kallisto topic.
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
A guide to using a Seurat object in conjunction with RNA Velocity
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
Automated and friendly RNA-seq analysis (deprecated)
Experiment illustrating how Nextflow can make biological pipelines reproducible
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
docker file for genomic tools
Automated and friendly RNA-seq analysis (migrated to Parse Server)
Identification of viral RNA in single-cell RNA sequencing data
Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2
Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
kallisto task for RNA-seq workflow
RNA-Seq pipelines that use HISAT2, Kallisto, Salmon, DESeq and Sleuth.
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
Pipeline for analysing differential isoforms in fetal and adult cardiac fibroblasts
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.