There are 1,394 repositories under bioinformatics topic.
List of Computer Science courses with video lectures.
Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A curated list of awesome Bioinformatics libraries and software.
A DSL for data-driven computational pipelines
Conda recipes for the bioconda channel.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Official code repository for GATK versions 4 and up
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Single-cell analysis in Python. Scales to >1M cells.
A full spaCy pipeline and models for scientific/biomedical documents.
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Data intensive science for everyone.
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Robust, flexible and resource-efficient pipelines using Go and the commandline
Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org
Aggregate results from bioinformatics analyses across many samples into a single report.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
A plotly.js React component from Plotly 📈
Scalable genomic data analysis.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Unix, R and python tools for genomics and data science
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
Python and C++ code for reading and writing genomics data.
MMseqs2: ultra fast and sensitive search and clustering suite
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Scripts to download genomes from the NCBI FTP servers
C library for high-throughput sequencing data formats
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development
A high-performance, Pythonic language for bioinformatics
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
A cross-platform command-line tool for executing jobs in parallel
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment