wes
There are 1 repository under wes topic.
flowhub-team / WholeGenomeSequencing-WGS
Whole Genome Sequencing analysis, WGS analysis
nf-core / raredisease
Call and score variants from WGS/WES of rare disease patients.
Language:Nextflow 72- snsLanguage:Shell 61
zhengxwen / SeqArray
Data management of large-scale whole-genome sequence variant calls (Development version only)
Language:C++ 42- Language:R 24
greenelab / pdx_exomeseq
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
Language:HTML 21FNL-MoCha / nextgenseq_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Language:Python 18ShixiangWang / gcap
GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap
Language:R 14jfnavarro / hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
Language:Python 10DKFZ-ODCF / AlignmentAndQCWorkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs
Language:Python 7galantelab / sideRETRO
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
Language:C 7hamidghaedi / pipeline_whole_exome_sequencing_analysis
The snakemake workflow for whole-exome sequencing analysis and generating vcf files
Language:Python 6bcgov / WES-engagement-states
Work Environment Survey employee engagement states
Language:R 5- schema
athenarc / schema
SCHeMa (Scheduler for scientific Containers on clusters of Heterogeneous Machines) is an open source platform to facilitate the execution and reproducibility of computational experiments on heterogeneous clusters.
Language:PHP 3 - Language:R 3
BU-ISCIII / panelLowFreq-nf
This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.
Language:Nextflow 3CERC-Genomic-Medicine / WEGS_pipelines
Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
Language:Nextflow 3- Language:Python 3
auroramaurizio / my_DNA_seq_pipelines
In this repository I backup the pipelines I write for the project I am involved
Language:Python 1- Language:Python 1
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
Language:Shell 1gustaveroussy / wes-snp-bwa-mutect2-annovar
Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation
jinghuazhao / SCALLOP-Seq
Single point and rare variant analysis for the SCALLOP-Seq analysis
Language:Shell 1dduv-ddit / highlander
GUI coupled to a local database that centralize all NGS variant data and annotations, and to provide powerful filtering tools that are easily accessible to the biologist.
Language:Java 0ga4gh-tech-team / wdl-echo
Workflow Description Language (WDL) test workflow. Write custom messages as file outputs. For testing Cloud WS APIs and the GA4GH Starter Kit.
Language:wdl 0Workflow Description Language (WDL) test workflow. Write hardcoded messages to stdout. For testing Cloud WS APIs and the GA4GH Starter Kit.
Language:wdl 0kkwock / VARify
Transcriptional variant verification to validate predicted variants from genomic data in expressed transcripts
Language:HTML 0VariantCaller / exomeVarScore
WES pipeline with customizable scoring system based on 10 criteria.
Language:Python 0AbdelrahmanYahia / wes_gatk
Whole exome sequencing snakemake workflow based on GATK best practice
Language:Jupyter Notebook- Language:HTML
icgc-argo / workflow-gateway
WES workflow API
Language:Dockerfilelabbcb / espresso-caller
Automated and reproducible tool for identifying genomic variants at scale ☕️
Language:WDL- Language:HTML
mrueda / ScrippsCall
SRTI framework to perform variant calling and prioritization of WES
Language:Perlprathikotian / thedarjeelinglimited
An Ode to Wes Anderson. The Darjeeling Limited.
Language:HTML- -JavaScript30Language:HTML
