crispr-analysis
There are 0 repository under crispr-analysis topic.
davidliwei / awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
lucapinello / CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Language:Python 130gear-genomics / tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Language:C++ 97Russel88 / CRISPRCasTyper
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Language:Python 89- Language:Python 62
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Language:JavaScript 31- Language:Python 29
nf-core / crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Language:Nextflow 23ArcInstitute / ScreenPro2
Flexible analysis of high-content CRISPR screening
Language:Python 18felicityallen / JACKS
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Language:Python 14crisprVerse / crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
Language:R 11BIMSBbioinfo / crispr_DART
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Language:R 10Tutorials for the crisprVerse
Language:TeX 10tdseher / addtag-project
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Language:Python 10bmds-lab / Crackling
CRISPR, faster, better – The Crackling method for whole-genome target detection
Language:C++ 9MDhewei / protiler
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
Language:Python 8fuhuancheng / CRISPR-GRANT
A cross-platform Graphical Analysis Tool for high-throughput CRISPR-based genome editing evaluation
Language:Nim 6Useful human and mouse data for the crisprVerse ecosystem
Language:R 5Visualization of CRISPR guide RNAs (gRNAs)
Language:R 5hyunhwan-jeong / CB2-Experiments
CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.
Language:HTML 5- Language:Perl 4
TuanjieNew / Indel-Finder
A program used to find indels on target gene edited by CRISPR/Cas9
Language:Python 4- Language:Python 3
ZuberLab / mageck-nf
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
Language:R 3AleVin1995 / MinTEs
MinTEs is a computational framework that aims at finding optimised reference templates given user-specified parameters (i.e. CRISPR-Cas9 library, reference gene templates, percentage of subsampling).
Language:Jupyter Notebook 2Bowtie-based alignment of CRISPR gRNA spacer sequences
Language:R 2Shiny interface for CRISPR gRNAs designed with the crisprVerse
Language:R 2Gaorav-Gupta-Lab / Volundr
Bioinformatics pipeline to analyze CRISPR synthetic lethal and synthetic viable screens
Language:Python 2LabFBARRO / CRISPRanalysis
InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.
Language:Python 2- Language:Python 2
Princeton-LSI-ResearchComputing / PE-small-RNA-seq-analysis
Small RNA-Seq analysis for Yan J., Ravisankar P., Zhao A., Li H., Oyler-Castrillo P., Solley S., Chan M., Parsons L., Adamson B. (2023). An endogenous small RNA-binding protein safeguards prime editing. Manuscript submitted for publication.
Language:R 2- Language:Nextflow 2
BWA-based alignment of CRISPR gRNA spacer sequences
Language:R 1Pre-trained models for the crisprScore package
Language:R 1GilbertLabUCSF / ScreenPro2
[This is an archived repository, see the current version in Arc Institute GitHub]
Language:Python 1rozanecm / 7550_tpFinal
TP final de la materia 7550 - Introduccion a los sistemas inteligentes
Language:Jupyter Notebook 1
