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Broad Institute (broadinstitute)

Broad Institute

broadinstitute

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Broad Institute of MIT and Harvard

Location:Cambridge, MA

Home Page:http://www.broadinstitute.org/

Twitter:@broadinstitute

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Broad Institute's repositories

gatk

Official code repository for GATK versions 4 and up

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cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

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warp

WDL Analysis Research Pipelines

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long-read-pipelines

Long read production pipelines

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depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

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single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

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viral-pipelines

viral-ngs: complete pipelines

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PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

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rawls

Rawls service for DSDE

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seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

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palantir-workflows

Utility workflows for the DSP hydro.gen team (formerly palantir)

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ddp-study-server

Pepper Study Server

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datarepo-helm

A helm repo for Broad Data Science Platforms helm charts

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gnomad-constraint

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juniper

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datarepo-helm-definitions

Helm deployment specific values and definitions for Dev, Integration and Prod

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orsp-pub

Public ORSP Compliance Portal

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backstage

Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)

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beehive

Beehive is a web UI for interacting with Sherlock, DSP DevOps's deployment source-of-truth service

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cromwhelm

Tentative first steps into the world of helm charts

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dig-dug-portal

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sherlock

DSP DevOps's deployment source-of-truth service

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viral-classify

viral-ngs: taxonomic identification, classification, and filtering steps

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antryg

Adventures in symbolic algebra

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eQTL_annotations

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LeLiu_Projects

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puppet-freeradius

Puppet module to install and configure FreeRADIUS

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stp_segmentation_wdl

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TerraWorkflows

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tgg-connect-may2024

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