blastn
There are 0 repository under blastn topic.
OpenHero / gblastn
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Language:C++ 60drostlab / metablastr
Seamless Integration of BLAST Sequence Searches in R
Language:R 31- Language:R 23
laurentnoe / yass
genomic alignment similarity search tool
Language:C 19- Language:JavaScript 14
billzt / PrimerServer
Obsolete!! Begin to turn to PrimerServer2
Language:Perl 10jaswindersingh2 / RNAcmap
A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
Language:Python 9- Language:Python 8
Reconfigurable-Computing-CalPoly-Pomona / Reconfigurable-BLAST-N
The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs
Language:C 7vestalisvirginis / synphage
Pipeline to create phage genome synteny graphics from genbank files
Language:Python 6mkandziora / PhylUp
PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.
Language:Python 5asadprodhan / A-beginner-s-guide-to-Bioinformatics
A beginner’s guide to Bioinformatics
TuanjieNew / Indel-Finder
A program used to find indels on target gene edited by CRISPR/Cas9
Language:Python 4brianSalk / blast_practice_data
data used in the youtube video
BTalamantesBecerra / omicR
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).
Language:Python 2omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.
Language:Python 2JacobLondon / Blastn
The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs
Language:C 2pranavkhurana / Seabuck-thorn
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
Language:PHP 2iruziky / Alinhamento-com-Blast
Automações para realizar alinhamentos em grande escala com o Blast
Language:Python 1- Language:Python 1
- Language:Jupyter Notebook 1
ohnosequences / blast-api
A typesafe Scala BLAST API
Language:Scala 1vizkidd / QuickBLAST
BLAST without Sys.Call()
Language:C++ 1hsmurali / Transitive_Annotation
The impact of transitive annotation on the training of taxonomic classifiers
Language:Jupyter Notebook 0ifremer-bioinformatics / BLAST-PLAST-bench
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
Language:Shell 0- Language:Python 0
petersm3 / filterfastq
Filter out sequences in FASTQ files that match a reference genome
Language:Perl 0- Language:Python 0
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
Language:ShellHow do I automate extracting multiple gene sequences from multiple genomes?
Language:Shellgeorgiesamaha / ProbeRemap
Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
Language:Pythongloshiii234 / bola
This repository conatins bash scripts for performing a blast search using a custom database of BOLA-DRB3 alleles that were sequenced using Sanger sequencing.
lynnlangit / blastn-jupyter-docker
Container for blastn and Jupyter notebook
Language:Shellmeeranhussain / BLAST_GNU_parallel
BLAST searches in parallel using GNU Parallel
Language:Python
