fasta-format

There are 0 repository under fasta-format topic.

• BioJulia / FASTX.jl

  Parse and process FASTA and FASTQ formatted files of biological sequences.

  fastabiobiojuliajuliaparsingfile-formatfastqfastq-formatfastq-filesfasta-formatfasta-files
  Language:Julia 61

• cobilab / cryfa

  A secure encryption tool for genomic data

  encryptioncompactkeygenfastq-formatfasta-formatgenomics
  Language:C++ 55

• suchapalaver / fastas2kmers

  A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

  kmerkmer-countingkmer-frequency-countkmerskmer-lengthfasta-sequencesfasta-format
  Language:Python 9

• biocpp / biocpp-io

  BioC++ Input/Output library

  biocppfastafastqfastq-formatbcfbcftoolsbiopythoncplusplus-20fasta-formatheader-onlymodern-cppseqansequence-analysisvcfvcf-formatcsvinput-outputtsvc-plus-plus
  Language:C++ 8

• xapple / fasta

  This package enables you to deal with biological sequence files easily.

  bioinformaticsfasta-format
  Language:Python 7

• aaiezza / FLiCK

  FLiCK - Format LeveragIng Compression frameworK

  fastacompression-algorithmnucleotidesbiologychemistrycompressiondnageneticsrna-seqdangerfastqsam-filesbam-filesfastq-formatfastq-filesfasta-formatfasta-filesflickbioinformaticscomputational-biology
  Language:Java 2

• biodata-fun / fasta_parser

  Small package used to parse a file in the Fasta format

  dnafasta-formatfasta-parser
  Language:C++ 2

• BTalamantesBecerra / omicR

  omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.

  dartseqfastafasta-sequencesfasta-formatblastblastnblast-filter
  Language:Python 2
• pdb2fasta

  exTerEX / pdb2fasta

  A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.

  fastapdbfasta-filesprotein-data-bankfasta-formatbioinformatics
  Language:C 2

• abhijeetsingh1704 / DupRemover

  Removes duplicate sequences in multifasta file

  fastafasta-sequencesfasta-formatunique
  Language:Python 1

• abhijeetsingh1704 / fastA2Q

  simple and convenient program to convert fasta sequences to fastq sequences

  fastqfqfastq-filesfastq-formatfasta-sequencesfasta-formatfastasequenceconversion
  Language:Shell 1

• laurentnoe / storm

  Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

  read-mappingillumina-sequencingspaced-seedsimd-intrinsicsopenmp-parallelizationsequence-alignmentfastafastqfasta-formatfastq-formatincrementalindelssam-outputsam-fileillumina
  Language:C 1

• MrColinHan / Haim-Lab-Projects

  Python Scripts for Haim Lab (Microbiology Research) Projects

  pythonmicrobiologyfasta-formatamino-acid-sequenceeuclidean-algorithmcsv-parserdataframevolatilitystandard-deviation
  Language:Python 1

• Picani / fastalen

  Small and fast FASTA sequences length fetcher

  cfasta-formatbioinformatics-toolcommand-line-toolfastafasta-sequencesfasta-files
  Language:C 1

• UDC-GAC / hsp

  Hadoop Sequence Parser (HSP) library

  big-datamapreducehadoopdna-sequencesfastq-formatfasta-format
  Language:Java 1
• Bioinformatics

  bhagesh-codebeast / Bioinformatics

  fasta-formatgenbankjupyter-notebookspdb-filesstatisticsvisualisation
  Language:Jupyter Notebook 0

• HounerX / Fasta_Splitter

  Fasta_splitter

  fastabioinformaticsfasta-sequencesfasta-format
  Language:Shell 0

• jakubpas / alignment-java

  Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.

  levenshtein-distanceglobal-alignmentfasta-formatbiojava
  Language:Java 0

• sharkLoc / fakit

  fakit: a simple program for fasta file manipulation

  bioinformaticsfastahtsfasta-formatfasta-parser
  Language:Rust 0

• sinnamone / converting_utility

  converter raw sequence files

  fasta-formatfastqtabularconverter
  Language:Python 0

• verheytb / fdemux

  fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.

  fasta-formatfastq-formatdemultiplexingsequencingfiltering
  Language:Python 0

• CaileanCarter / EMBLtoFASTA

  Convert EMBL files to FASTA

  emblfasta-format
  Language:Python

• Hoss3inf / Protein-sequence-labeler

  fasta-formatfasta-sequenceslabeled-datanodejsprotein-sequences
  Language:JavaScript

• jlboat / Faidx

  Index FASTA file

  fasta-formatfastajavaindex
  Language:Java

• Matthew-Mosior / idris2-biocore

  Idris (Idris2) port of the Haskell biocore library.

  biocorefasta-formatfasta-sequenceshaskell-portidris2
  Language:Idris

• Matthew-Mosior / idris2-biofasta

  Idris (Idris2) port of the Haskell biofasta library.

  biofastafasta-formatfasta-sequenceshaskell-portidris2
  Language:Idris

• mooreryan / grep_fasta

  Grep sequences from a fasta file

  bioinformaticsparsingfasta-format
  Language:Scheme

• sgelias / csv2fas

  Parse CSV files containing fasta components to a true fasta file.

  dna-sequencesfasta-formatpython
  Language:Python