There are 5 repositories under singularity topic.
A DSL for data-driven computational pipelines
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
A docker image for converting docker images to singularity images.
Simplify HPC and Batch workloads on Azure
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Docker/Singularity image for Ubuntu with X11 and VNC
Singularity implementation of k8s operator for interacting with SLURM.
The Singularity implementation of the Kubernetes Container Runtime Interface
Tutorial for using Singularity containers
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
server for storage and management of singularity images
HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit
Create container images for using Julia packages (especially useful in environments without Internet access)
Nextflow pipeline for analysis of direct RNA Nanopore reads
Snakemake pipelines for nanopore sequencing data archiving and processing
A extremely fast ioc container for high performance applications
orchestration for singularity containers (under development)
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
An example GitHub Action (CI) to build a Singularity container
[CVPR 2024] Tackling the Singularities at the Endpoints of Time Intervals in Diffusion Models
streamlined singularity python client (spython) for singularity
Singularity容器运行 deepin wine 微信
You should offer both Podman and Apptainer with name spaces on your HPC systems
COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.
Microsoft Research Singularity RDK 2.0 Source
A novel composable rootless container system