dna-alignment

There are 0 repository under dna-alignment topic.

• OpenHero / gblastn

  G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

  bioinformaticshigh-performancehigh-performance-computinggpuncbi-blastblastnnvidiacudadnadna-sequencesdna-alignment
  Language:C++ 60

• NuttyLogic / BSBolt

  BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool

  methylationbisulfite-sequencingdna-alignment
  Language:Python 20

• mcychan / DNAssist

  DNAssist: the integrated editing and analysis of molecular biology sequences in Windows

  dna-alignmentdna-sequence-analysisdna-sequence-readermfc
  Language:C++ 10

• genomematt / pylazybam

  A pure python lazy BAM parser

  bioinformaticsbiological-data-analysisbiological-sequencesdna-alignmentpython
  Language:Jupyter Notebook 5

• Mathieu2301 / Projet-BioInfo

  bioinformaticsdna-sequencesdna-sequencingdna-processingdna-alignment
  Language:Shell 2

• sirineFoudili / DNA-comparison-and-alignment-

  web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.

  dnaadnalignementalignmentalignment-freeindexationbloom-filterk-mershashingphylogenetic-treephylogeniedna-alignmentneedleman-wunschflaskpythonbioinformaticsbioinformatique
  Language:JavaScript 2

• bhatiasiddharth / Parallel-DNA-Sequence-Alignment

  Parallel-DNA-Sequence-Alignment

  cudadnadna-alignmentdna-sequence-alignmentparallel
  Language:Cuda 1

• SeanXiaoby / csci570_finalProj

  This is a repo for the algorithms solutions towards the DNA alignment problem. I adopt two ways to solve the problem: dp and Divide n' Conquer

  algorithmsdivide-and-conquerdna-alignmentdynamic-programming
  Language:C++ 1

• AP-Y / dna-alignment

  A program that enables biologists to score the similarity between DNA sequences and view the aligned portions

  dnadna-alignmentdna-sequences
  Language:Python 0

• Kuhjuice / sequence_alignment_by_cross_correlation

  The project is based on the paper Sequence Alignment by Cross-Correlation and bridges the gap between the knowledge and an useful implementation.

  crosscorrelationdna-alignmentbioinformaticsbiotechnology
  Language:Python 0

• mdcjansen / DBA

  DNA barcoding analysis pipeline

  bioinformaticsbioinformatics-analysisdnadna-alignmentdna-barcodedna-barcodingdna-sequencesgenomicssanger-chromatogramsspecies-identificationblastnmega11genbank-filesgenbankfastaab1phylogeneticsphylogeny
  Language:Python 0

• omercelik-cs / dynamic-dna-sequence-alignment

  bioinformaticsdna-alignmentneedleman-wunschdynamic-programming
  Language:Java 0

• pmambrose / docker-bowtie2

  Bowtie2 v2.5.2 Dockerfile Native for Apple M1+ Silicon (ARM64) and Intel/AMD (x86_64) Containers

  aarch64amd64apple-siliconarm64bioinformaticsbiologybowtie2dnadna-alignmentdna-sequencingdockerdocker-containerdocker-imagedockerfile
  Language:Dockerfile 0

• celestialphineas / MathematicaSAM

  Import and export .SAM (Sequence Alignment/Map format) files in Mathematica

  bioinformaticsdna-alignmentmathematicasam
  Language:Mathematica

• CoolCat467 / Coding-For-Medicine-2020

  This is a bunch of programs I created in the 2020 Intermediate Coding For Medicine Course. No Stealing.

  dnadna-alignmentdna-sequences
  Language:Python

• GZHoffie / dna-align-dataset

  Guide to download NCBI Bioproject sequencing data and script to generate DNA short read alignment dataset from the data.

  dna-alignmentstring-alignment
  Language:Shell

• tomekkorbak / computational-genomics-experiments

  A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw

  computational-biologygenomicsdna-alignmenthox-proteinsphylogenetic-treephylogenetic-profiles
  Language:Jupyter Notebook