Asad Prodhan's repositories
GPU-accelerated-guppy-basecalling
GPU-accelerated guppy basecalling and demultiplexing on Linux
sangerFlow
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
Average-Nucleotide-Identity-ANI-analysis
Average Nucleotide Identity (ANI) analysis
BioinfTutorials
Bioinf Tutorials
How-to-download-the-metadata-of-all-publicly-available-genome-sequences-of-an-organism
How to download the metadata of all publicly available genome sequences of an organism?
How-to-manually-download-the-metadata-of-all-the-available-genomes-of-an-organism-in-NCBI
How to manually download the metadata of all the available genomes of an organism in NCBI?
2023_London_Calling_Poster
2023_London_Calling_Poster
About-the-PATH
path vs PATH
An-introduction-to-R-coding
An introduction to R coding
Bacterial-phylogenetic-tree-reconstruction-using-UBCG-pipeline
Identifying pathogenic bacteria
A-Guide-to-Automatically-Downloading-NCBI-SRA-Reads
A Guide to Automatically Downloading NCBI SRA Reads
blastn
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
Dorado-basecalled-reads-improve-old-bacterial-genome-assembly
Dorado-basecalled reads improve old bacterial genome assembly
Downloading_genomes_from_RefSeq
Downloading Genomes from RefSeq
Gene_seq_extraction_from_multiple_genomes
How do I automate extracting multiple gene sequences from multiple genomes?
How-to-download-all-the-available-genome-sequences-of-an-organism-automatically
How to download all the available genome sequences of an organism automatically?
How-to-download-genomes-using-the-accession-number
How to download genomes using the accession number
How_to_connect_to_Pawsey_nimbus_instance
Nimbus Instance
How_to_download_genome_sequences_manually
How to download genome sequences manually?
Navigating_a_Linux_computer
Navigating a Linux computer
phyloTree
Bayesian phylogenetic analysis
phyloTreeHPC
phyloTreeHPC, an automated, reproducible, and scalable workflow for Bayesian phylogenetic analysis using a HPC cluster, Nextflow, and Singularity container
Publishing_a_paper_by_Prof_Lambers
Publishing_a_paper_by_Prof_Lambers
Setting-up-R-Studio
Setting up R Studio
Writing-and-Publishing-Protocols-Using-GitHub
Writing and publishing a GitHub repository