canonical-base-pairs

There are 0 repository under canonical-base-pairs topic.

jaswindersingh2 / SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
rna rna-secondary-structure deep-learning transfer-learning ensemble-model resnet blstm-neural-networks tensorflow rna-secondary-structure-prediction canonical-base-pairs noncanonical-base-pairs pseudoknot-base-pairs pdb-dataset bprna-dataset multiplets-base-pairs lone-pairs machine-learning rna-structure rna-structural-analysis rna-structure-motifs
Language:Perl 91
jaswindersingh2 / SPOT-RNA2
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
rna-secondary-structure deep-learning evolutionary-information multiple-sequence-alignment homologous-sequence spot-rna2 canonical-base-pairs non-canonical-base-pairs pseudoknot-base-pairs lone-pairs base-triples direct-coupling-analysis transfer-learning
Language:Perl 23
jaswindersingh2 / RNAcmap
A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
rna-seconday-structure direct-coupling-analysis spot-rna rnafold msa infernal blastn gremlin plmc mf-dca end-to-end-pipeline evolutionary-couplings canonical-base-pairs non-canonical-base-pairs tertiary-interactions pseudoknot-base-pairs rna-contact-prediction
Language:Python 9