blast

There are 2 repositories under blast topic.

a3vilc0de / PentesterSpecialDict
Dictionary sets often used in penetration testing work
dictionary fuzzing fuzz burp blast boom
Language:PHP 1398
MMseqs2
soedinglab / MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
bioinformatics sequence-clustering profile-search sequence-search linclust mmseqs metagenomics alignment blast taxonomy
Language:C 1241
mosuka / blast
Blast is a full text search and indexing server, written in Go, built on top of Bleve.
golang go search-engine grpc raft docker index search restful-api blast cluster
Language:Go 1069
$unity-fracture$ ElasticSea / unity-fracture
Fracture any mesh at runtime
unity fracture rigidbody blast nvidia
Language:C# 977
tanghaibao / jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
genomics genome-sequencing comparative-genomics variant-calling genetic-maps sequence-alignments bioinformatics synteny allmaps assembly blast
Language:Python 689
seqan / seqan
SeqAn's official repository.
cpp14 bioinfomatics high-performance simd sequence-alignments alignment bwt indexing suffixarray htslib sam-bam fasta fastq-format blast seqan
Language:C++ 452
seqan3
seqan / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
sequence-analysis seqan cpp17 cpp20 cpp-concepts bioinformatics blast sequence-alignment fasta fastq samtools fm-index modern
Language:C++ 385
williamgilpin / pypdb
A Python API for the RCSB Protein Data Bank (PDB)
pdb blast proteomics protein-structure protein-sequences proteins protein-data-bank
Language:Python 288
wurmlab / sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
blast bioinformatics sequencing genomics-visualization genomics visualization sequence-alignment hacktoberfest ruby javascript
Language:JavaScript 264
drostlab / orthologr
Genome wide orthology inference and dNdS estimation
blast-searches orthology-inference comparative-genomics-studies genomics sequence-alignments blast comparative dnds-estimation codon-alignment r entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Language:R 82
seqan / lambda
LAMBDA – the Local Aligner for Massive Biological DatA
bioinformatics blast blast-searches ncbi-taxonomy alignment metagenomics protein-sequences high-performance seqan
Language:C++ 74
billzt / PrimerServer2
PrimerServer2: a high-throughput primer design and specificity-checking platform
primer-design thermodynamics html5 d3js blast throughput-primer specific-primers
Language:Python 69
AbelChe / BlastWithCaptcha
BlastWithCaptcha v0.2 验证码识别爆破本地ocr 多线程爆破支持带id的验证码支持payload变形
blast captcha ddddocr multithreading ocr plugins python
Language:Python 65
aleimba / bac-genomics-scripts
Collection of scripts for bacterial genomics
perl bioinformatics genomics science microbial-genomics microbiology ngs sequencing annotation mlst blast unix bioperl scripts-collection opensource computational-biology
Language:Perl 42
clemgoub / TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequences
transposons blast dot-plot annotation protein tir ltr structure bioinformatics-tool transposable-elements
Language:R 36
ncbi / elastic-blast
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
ncbi blast bioinformatics
Language:Python 36
drostlab / metablastr
Seamless Integration of BLAST Sequence Searches in R
blast-searches blast blastn blasting sequence-diversity biological-sequences biomartr species nucleotide blast-hits blast-search protein
Language:R 31
BLAST-Documentation
nijnstein / BLAST-Documentation
https://blast-script.com/
blast script runtime compiler interpretor for unity burst
Language:C# 28
datasnakes / OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python bioinformatics orthologs biology phylogenetics ncbi ftp blast qsub orthology-inference pbs bash shell genetics sequence-alignment orthology orthologues sge biosql data-science
Language:Python 27
desmid / mview
MView extracts and reformats the results of a sequence database search or multiple alignment.
bioinformatics bioinformatics-tool sequence-alignment-visualization blast-search blast fasta clustal
Language:Perl 26
Lattice-Automation / repp
repository-based plasmid design
plasmid gibson assembly dna repositories blast bioinformatics
Language:Go 25
bebop / ark
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
blast chembl genbank metabolic-engineering metabolic-network metabolic-pathways metabolomics rhea uniprot api rest-api
Language:Go 22
Edinburgh-Genome-Foundry / genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
synbio bioinformatics blast python ncbi synthetic-biology taxid bowtie
Language:Python 21
widdowquinn / 2018-03-06-ibioic
Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
teaching teaching-materials bioinformatics blast uniprot python biopython jupyter-notebook
Language:HTML 20
sing-group / biojs-vis-blasterjs
BlasterJS - an open source JS library to display Blast results
blast blast-output-viewer biojs javascript npm bootstrap html2canvas
Language:JavaScript 19
Joseph7e / Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
taxonomy-assignment qiime blast ncbi-taxonomy ncbi-blast ncbi-database
Language:Python 17
laelbarlow / amoebae
Workflow for identifying and classifying homologous gene/protein sequences
bioinformatics hmmer3 biopython python3 blast genome-annotation similarity-search coulson-plot transcriptome-annotation snakemake-workflow comparative-genomics homology molecular-evolution gene-families protein-families orthology
Language:Python 17
blast
SarthakMakhija / blast
Load generator for TCP servers.
golang load-generator tcp blast
Language:Go 17
vinuesa / TIB-filoinfo
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
bash-scripting bioinformatics-scripts blast linux-shell maximum-likelihood model-selection multiple-sequence-alignment phylogenetics reciprocal-blast-hits tutorials bioinformatics pangenomics phylogenomics
Language:Shell 17
Zenleaf / entrez-rs
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
entrez gene pubmed rust biorust medical bioinformatics ncbi blast
Language:Rust 17
Azure / azure-hpc
Microsoft Azure HPC & Big Compute
azure-hpc azure-storage bioinformatics blast blastn blast-searches blast-search lifescience research
Language:JavaScript 14
mtisza1 / Cenote-Taker
DEPRECATED: Use Cenote-Taker 3 instead
genome-annotation genome virus metagenomics circle blast hhblits orfs taxonomy plasmid genbank deprecated-repo
Language:Shell 14
NAL-i5K / genomics-workspace
Django website project for common sequence search tools.
django blast hmmer clustal bioinformatics django-application django-blast django-hmmer django-clustal ncbi-blast genomics sequence-alignment genomics-visualization
Language:JavaScript 14
ardyan69 / wa
Whatsapp Blasting with TagUI
whatsapp blasting message blast tagui rpa automation wa windows
Language:Batchfile 13
BFL-lab / Mfannot
MFannot is a program for the annotation of mitochondrial and plastid genomes
genome mitochondrial erpin hmmer blast muscle pipeline bioperl docker-container umac tbl2asn
Language:Perl 13
wyim-pgl / DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
blast ncbi-blast grid-engine sequence-analysis robust cluster grid-cloud hpc perl plast hpc-blast hpc-applications
Language:Perl 13