There are 20 repositories under protein topic.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
A collection of awesome things regarding all omics.
Diffusion models of protein structure; trigonometry and attention are all you need!
A dependency-free cross-platform swiss army knife for PDB files.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
a JavaScript DNA, RNA, and protein sequence viewer
Evolutionary couplings from protein and RNA sequence alignments
[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
A collection of research papers for AI-based protein design
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Scientific Large Language Models: A Survey on Biological & Chemical Domains
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
Protein-compound affinity prediction through unified RNN-CNN
Python module for drawing and rendering beautiful atoms and molecules using Blender.
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Graph Network for protein-protein interface
ProteinGCN: Protein model quality assessment using Graph Convolutional Networks
Neural Networks for Protein Sequence Alignment
View proteins and trajectories in the terminal
VSCode Extension for interactively visualising protein structure data in the editor
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
:fork_and_knife: Food Nutrients