taxonomy-database

There are 1 repository under taxonomy-database topic.

• pipetaxon

  voorloopnul / pipetaxon

  PipeTaxon exposes the ncbi taxonomy database as a REST API.

  ncbitaxonomy-databasencbi-taxonomy-databaseapibioinformaticsbiologycomputation-biologypythondjangodjango-rest-framework
  Language:Python 23

• certtools / tag2domain

  A mapping project between tags (annotations, labels) and domain names

  machine-tagstaxonomytaxonomiestaxonomy-databasemispcybersecurity
  Language:Python 11

• Rekyt / taxo_harmonization

  :notebook: Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz

  biodiversity-databasetaxonomic-classificationtaxonomic-databasestaxonomytaxonomy-database
  Language:R 10

• flefler / CyanoSeq

  CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing

  amplicon-datasetsamplicon-sequencingcyanobacteriametabarcodingtaxonomic-classificationtaxonomy-assignmenttaxonomy-database
  9
• checklistbank

  CatalogueOfLife / checklistbank

  UI for checklistbank.org

  taxonomic-classificationstaxonomiestaxonomytaxonomy-databasetaxonomy-management
  Language:JavaScript 6

• qLSLab / ExTaxsI

  Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations.

  bioinformaticsecologyvisualizationmolecular-biologymoleculardatataxonomic-classificationstaxonomy-databasetaxonomypythontaxonomy-management
  Language:HTML 4

• bio-org-au / services-g3

  Grails 3 port of NSL services

  biodiversity-informaticsgrails3taxonomytaxonomic-classificationtaxonomy-database
  Language:Groovy 1

• NiklasHohmann / messinian_db

  Supplementary code for "A revised marine fossil record of the Mediterranean before and after the Messinian Salinity Crisis". Generates summary statistics and maps.

  biodiversityconnectivityfossil-recordmessinianmiocenepalaeontologypaleontologyrichnesssalinity-crisistaxonomytaxonomy-databasetortonianturnoverzanclean
  Language:R 1

• skchronicles / ReptileDB

  Django web application that provides a catalogue of all living reptile species and their classification; currently there are more than 10,000 species including another 2,800 subspecies

  djangomariadbtaxonomy-database
  Language:JavaScript 1

• hsmurali / Transitive_Annotation

  The impact of transitive annotation on the training of taxonomic classifiers

  16s-rrnaadversarial-examplesblastntaxonomic-classificationtaxonomy-databaseerror-percolationtransitive-annotationamplicon-sequencingmetagenomic-classification
  Language:Jupyter Notebook 0

• YoannPa / Designing_Organisms-Genomes_Database_in_OCaml

  Design a pseudo database to link data on organisms and data on their genomes, all operating with recursive functions in OCaml.

  taxonomy-databasegenomesdatabasebioinformatics
  Language:OCaml