spaced-seed

There are 0 repository under spaced-seed topic.

laurentnoe / yass
genomic alignment similarity search tool
sequence-alignment spaced-seed dna-sequences fasta-sequences fasta genomic-data-analysis blastn blast-search sequence-alignments align-dna-sequences
Language:C 18
gsiekaniec / ORI
ORI (Oxford nanopore Reads Identification) is a software allowing, from long nanopore reads, to identify the bacterial strains present in a sample.
strains identification nanopore classification howdesbt spaced-seed long-reads minion strains-identification ori bacterial-strains
Language:C++ 3
laurentnoe / iedera
subset and spaced seed design tool
sequence-alignment indexing spaced-seed read-mapping alignment-free metagenomic-classification sequence-alignments k-mer align
Language:C++ 2
gabrielecanesi / DNA-SNP-finder
An algorithm for finding SNPs of a long read compared to a reference genome
bioinformatics dna-sequences kmers spaced-seed
Language:C++ 1
laurentnoe / storm
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
read-mapping illumina-sequencing spaced-seed simd-intrinsics openmp-parallelization sequence-alignment fasta fastq fasta-format fastq-format incremental indels sam-output sam-file illumina
Language:C 1
acgtun / gpu-perm
The GPU-version and MPI-version of PerM
gpu alignment sequence-alignment read-mapping spaced-seed mpi
Language:C++ 0
acgtun / perm2
DNA read mapping (seed-extension-aligner)
read-mapping sequence-alignment spaced-seed
Language:C++ 0