bedtools
There are 1 repository under bedtools topic.
- Language:HTML 221
- intervene
asntech / intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
Language:Python 134 - Language:R 89
noamteyssier / gia
gia: Genomic Interval Arithmetic
Language:Rust 51- Language:Perl 26
KCCG / seave
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling from single labs to multi-institution scale.
Language:HTML 15- PyGMQLLanguage:Python 13
LBGC-CFB / SpliceLauncher
RNAseq pipeline for alternative splicing junctions
Language:R 11rpianezza / GenomeDelta
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
Language:Shell 8asadprodhan / A-beginner-s-guide-to-Bioinformatics
A beginner’s guide to Bioinformatics
- Language:Python 3
muhligs / bed6ToBed12
program to make bed12 files from bed 6 files based on the name col of the bed6 file.
Language:Shell 3- ngsUtils
manojbhosale / ngsUtils
Useful NGS utilities for everyday use in the form of stand-alone tool.
Language:Java 2 afreeorange / autozygosity
A public, web-based homozygosity mapping tool
Language:Python 1jazminvaleriano / RNAseq-differential-expression
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
Language:Shell 1CHRUdeLille / bedtools
bedtools environment containerized for singularity
Language:Shell 0daaaaande / bionanotator
bionano annovar annotation
Language:Perl 0- Language:JavaScript 0
- Language:Python 0
- Language:Shell 0
sebastian-gregoricchio / Rseb
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
Language:R 0annalisaxamin / CHGproject
Project for the course of Computational Human Genomics, held by Francesca Demichelis (a.y. 2021-2022) @ University of Trento
Language:ShellHow do I automate extracting multiple gene sequences from multiple genomes?
Language:Shell- Language:Python
- Language:Shell
Grelot / reserveBenefit--snpsdata_analysis
Codes i wrote for the paper "genomic resources for Mediterranean fishes"
Language:Shell- Language:Shell
jrhawley / bio-jtools
Various bioinformatics tools in one package
Language:Pythonmetamaden / seq_answers
Sequencing data preprocessing
Language:R
