dna-barcode

There are 1 repository under dna-barcode topic.

• poly

  bebop / poly

  A Go package for engineering organisms.

  synthetic-biologysynbiogenetic-engineeringmolecular-biologybioengineeringcomputational-biologybioinformaticsdnafastagenbankcodon-optimizersequence-hashingplasmidsprimer-designdna-barcodedna-barcodinggolden-gatemashalignmentgo
  Language:Go 657

• LaoZZZZZ / bartender-1.1

  This bartender version could handle arbitrary length of barcode

  clusteringdna-sequencesdna-barcodedna-barcode-extractionmultiple-time-point
  Language:C++ 28

• Koeng101 / dnadesign

  A Go package for designing DNA.

  bioinformaticscodon-optimizationcodon-usagecomputational-biologydna-barcodedna-foldingfastafastqgenbankgenetic-engineeringgogoldengatemolecular-biologypileupplasmidsrna-foldingsamsynbiosynthetic-biology
  Language:Go 20
• facepai

  emmawahl / facepai

  Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

  bioinformaticsbioinformatics-pipelinebioinformatics-scriptsbiologymolecular-biologydna-sequencesdna-barcodeenvironmental-dna
  Language:Shell 6

• gear-genomics / bgen

  Barcode Generator

  gear-genomicsdnadna-sequencesdna-sequencingdna-barcodegenomicshigh-throughput-sequencing
  Language:JavaScript 3

• m-orton / Arctic-Biogeographical-Analysis-Pipeline

  Arctic Community Similarity using DNA Barcoding Data

  biogeographybarcode-index-numberdna-barcodearcticchironomidaer
  Language:R 3

• boopsboops / spider

  Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)

  dna-barcodespecies-delimitationrednaspecies-identityevolution
  Language:R 2

• brendanf / rITSx

  Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences

  bioinformatics-tooldna-barcode
  Language:R 2

• gear-genomics / bistro

  bistro: barcode distribution

  gear-genomicsdnagenomicsdna-barcodesequencing
  Language:HTML 2

• Landrylab / Evans-Yamamoto_et_al_2021

  Jupyter notebooks for BFG-PCA related simulation and analysis.

  synthetic-biologysystems-biologyprotein-protein-interactiondna-sequencingdna-barcodebarcode-fusion-genetics
  Language:Python 2

• stevexniu / fishprobe

  FISHprobe: DNA Probe Design Pipeline

  dna-barcodefluorescence-microscopy-imagingprobe-design
  Language:HTML 2

• andrewd789 / Barcoding_invertebrate_biodiversity

  Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.

  pythonrusearchvsearchbiodiversityinvertebratesdna-barcodepcr
  Language:R 1

• ekaminuma / BARCODE_STAT

  DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27

  bioinfomaticsdna-sequencesdna-barcodematlab
  Language:MATLAB 1

• GBIF-Europe / bold_sequence

  Linking BOLD sequences to specimens in GBIF

  biodiversity-informaticsbiodiversity-standardsgbifbolddna-barcode
  1

• itu-bioinformatics-database-lab / Hierarchical-Supervised-Learners

  Artifact repository for the paper "Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners", Journal of Bioinformatics and Computational Biology, 18(05), 2050026. doi:10.1142/S0219720020500262

  dnadna-barcodehierarchical-supervised-learnersmachine-learningrandom-forestresearchsvm
  Language:Jupyter Notebook 1

• m-orton / PlotlyMapTutorial

  Map plotting with Plotly using public BOLD API COI data

  boldsystemsplotlydna-barcodegeographic-datamapping-tools
  Language:R 1

• Jonathan-Edwall / Development-of-a-Dna-barcode-for-species-identification-of-tuna

  Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.

  dna-barcodedna-barcodingmega
  Language:Python 0

• mdcjansen / DBA

  DNA barcoding analysis pipeline

  bioinformaticsbioinformatics-analysisdnadna-alignmentdna-barcodedna-barcodingdna-sequencesgenomicssanger-chromatogramsspecies-identificationblastnmega11genbank-filesgenbankfastaab1phylogeneticsphylogeny
  Language:Python 0

• DanYamamotoEvans / BFG-PCA

  Jupyter notebooks for BFG-PCA related simulation and analysis.

  systems-biologysynthetic-biologydna-sequencingdna-barcodeprotein-protein-interactionbarcode-fusion-geneticsdata-analysisvisualizationpython
  Language:Python

• shalinshah1993 / temporalDNAbarcodes

  A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)

  matlab-functionssingle-molecule-imagingtemporal-dna-barcodesdna-barcodefluorescence-microscopy-imagingtirf
  Language:MATLAB