There are 9 repositories under genomic-data-analysis topic.
a framework for training sequence-level deep learning networks
A modular annotation tool for genomic variants
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
RADseq Data Exploration, Manipulation and Visualization using R
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
stackr: an R package to run stacks software pipeline
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Build DeepSea training dataset from raw data
Genome Contact Map Explorer - gcMapExplorer. Visit:
Shiny app for making and annotating Volcano plots
genomic alignment similarity search tool
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
iPat allows you to perform GWAS and GS with drags and clicks!
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
grur: an R package tailored for RADseq data imputations
Tools for exploration and analysis of biochemical data like genomics and proteins
Run Sentieon pipelines on Google Cloud Platform
Python library to query and transform genomic data from indexed files
Research into statistical distributions of genomes, proteomes and reactomes