Drost Laboratory - Digital Biology Research Group

philentropy

Information Theory and Distance Quantification with R

orthologr

Genome wide orthology inference and dNdS estimation

myTAI

Evolutionary Transcriptomics with R

metablastr

Seamless Integration of BLAST Sequence Searches in R

published_phylomaps

A Collection of Published Phylostratigraphic Maps and Divergence Maps

rdiamond

Running DIAMOND2 through R

edgynode

Statistical assessment and simulated evolution of gene regulatory networks

retrocombinator

An R/C++ package for simulating the evolution of retrotransposons over time.

network-inference-pipeline

Applying network-inference-toolbox to RNAseq data

seqstats

Biological Sequence Statistics in R

homologr

Homology inference across multiple species

network-inference-toolbox

A bunch of network inference utilities packaged as Singularity containers

patternseqr

Sequence feature detection and classification with R

gatai

setga

Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).

biodbretrievr

Retrieve and efficiently index entire biological sequence databases

biomartr

Genomic Data Retrieval with R

deepclust_colabfold

Using the DeepClust Database with ColabFold

deepclust_dataretrieval

Cluster Extraction for the DeepClust Database

diamond

Accelerated BLAST compatible local sequence aligner.

hitparsr

Distributed Databasing of Alignment Hit Data

shinyDIAMOND

A web interface to DIAMOND2

uberblast

Seamless Integration of BLAST Alignments in R