Beast code in Giters

TC-Hewitt's repositories

MuTrigo

Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).

Language:Python300

Axminster7A

Scripts and code used in the Pm1/AvrPm1 cloning paper ( https://doi.org/10.1111/nph.17075) for analysis of chromosome 7A from bread wheat cultivar Axminster. All commands and programs run in Linux environment.

Language:PythonGPL-3.0000

calcGDV

pipeline for calculating genotypic diagnostic values for discrete traits or classes given variant calling and phenotypic data

Language:Awk010

Misc_NGS

various tools that help with deep sequencing analysis

Language:PythonGPL-3.0000

OatCrownRust

Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.

Language:Python010