Georgie Samaha's repositories
configBuilder-nf
Nextflow config builder scripts for supported HPC infrastructures.
RentScraper
Scrapes rental listings from https://www.auhouseprices.com
BioinformaticsResources
List of tools and quick commands for various bioinformatics methods and datasets
biowasm
WebAssembly modules for genomics
Commandline_bioinformatics
One line commands for bioinformatics
configs
Config files used to define parameters specific to compute environments at different Institutions
Ev1_SelectionMetaAnalysis
Vignette and research project developed under the AES ERC Networking Grant Scheme.
juicer
PBS version of https://github.com/aidenlab/juicer for Flashlite HPC
kris_kringle_simulator
Pull names out of a hat for kris kringle with this python script
MyDockerfiles
Bioinformatics dockerfiles
nf-core_tools
Testing use of nf-core tools for automated testing of workflows
nf-coreBenchmark
Benchmarking scripts and config testing
ProbeRemap
Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
shpc-registry
A remote registry for Singularity Registry HPC 🖊️
website
Nextflow public web site