fasta-sequences
There are 1 repository under fasta-sequences topic.
- SNPGenie
chasewnelson / SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Language:Perl 117 josiahseaman / FluentDNA
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Language:JavaScript 70laurentnoe / yass
genomic alignment similarity search tool
Language:C 18Evolutionary Bioinformatics Toolkit (EBT)
Language:Perl 11ramsainanduri / split_multi_fasta
Split multi fasta file into single fasta files
Language:Python 9suchapalaver / fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
Language:Python 9kchu25 / SeqShuffle.jl
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Language:Julia 8sing-group / seda
SEquence DAtaset builder
Language:Java 6- Language:C 5
AJVelezRueda / sequence_clustering
Sequence clustering and database creation using mmseqs, from local fasta files
Language:Python 4CNuge / go-fasta
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format
Language:Go 4zmmason / BINF
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
Language:Python 4abhijeetsingh1704 / clean_DNA_fasta
Program to clean DNA fasta sequences
Language:Shell 3- PROST-witout-AlphaFold2
ShahidIqb / PROST-witout-AlphaFold2
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.
Language:Python 3 sooraj14072001 / TEAM-GENOMICS-ONE
Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!
Removes duplicate sequences in multifasta file
Language:Python 2BTalamantesBecerra / omicR
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
Language:Python 2omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.
Language:Python 2pavlohrab / process_fasta
A small collection of one-liners in a one bash script for fasta files processing.
Language:Shell 2pswsm / fasta_cli_tools
A small fasta CLI toolkit developed in Rust
Language:Rust 2Xyaneon / sequence-aligner
Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.
Language:Python 20AlphaZero0 / Aloneinthedark2.0-Master-Project
Terminal App to find ORF
Language:Python 1simple and convenient program to convert fasta sequences to fastq sequences
Language:Shell 1Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
Language:R 1AngeloGith / SeqCutter
SeqCutter is designed to extract specific subsequences from a FASTA file based on a cluster definition.
Language:Perl 1- BioinformaticsLanguage:Jupyter Notebook 1
IbrahimElzahaby / Erasmus_MC_Internship
Plasmidome analysis to track the transfer route of AMR genes in bacteria
Language:Jupyter Notebook 1limitedeternity / FASTAUtils
Various utilities for working with FASTA nucleotide sequences
Language:Dart 1moozeq / awd-fasta-plots
Creating plots using FASTA amino-acid files
Language:Python 1- Language:C 1
PNNL-Comp-Mass-Spec / Fasta-Organism-Filter
Reads a protein FASTA file and filters the proteins by organism name, protein name, or taxonomy ID to create a new, filtered file.
Language:C# 1Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!
tusharpandey003 / FASTA-Sequence-Analysis-Web-App
Analysis of FASTA ,Protein,DNA sequence.
Language:Python 1assadiab / Smith-waterman
🧬 Implementation of the Smith-Waterman algorithm for aligning amino acid sequences.
Language:C 0Lakshanj98 / Fasta-sequence-base-counts-and-length
Read a fasta sequence file, calculate base counts, print calculated base counts and print sequence length.
Language:Python 0Ramy-Badr-Ahmed / Bioinformatics-Misc-Scripts
Miscellaneous Scripts in Bioinformatics
Language:Python
