dna-barcoding

There are 0 repository under dna-barcoding topic.

poly
bebop / poly
A Go package for engineering organisms.
synthetic-biology synbio genetic-engineering molecular-biology bioengineering computational-biology bioinformatics dna fasta genbank codon-optimizer sequence-hashing plasmids primer-design dna-barcode dna-barcoding golden-gate mash alignment go
Language:Go 657
CNuge / coil
An R package for pre-processing and error evaluation of COI-5P barcode data
r bioinformatics dna-sequences dna-barcoding denoising hidden-markov-model
Language:R 2
HiddenDiversity
parsons463 / HiddenDiversity
This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".
species-delimitation biodiversity-informatics mammals cryptic-species machine-learning taxonomy conservation dna-barcoding
Language:R 2
CNuge / debar
A sequence-by-sequence denoiser for COI DNA barcode and metabarcode data
r bioinformatics dna-sequencing dna-barcoding hidden-markov-model denoising machine-learning
Language:R 1
kokinide / PARSID
Parser of BLAST results
blastn dna-barcoding parser species-identification molecular-taxonomy
Language:Python 1
naturalis / barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
dna-barcoding metabarcoding phylogenetic-diversity phylogenetic-placement phylogenetics
Language:Python 1
Jonathan-Edwall / Development-of-a-Dna-barcode-for-species-identification-of-tuna
Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.
dna-barcode dna-barcoding mega
Language:Python 0
manaakiwhenua / Fast_DNA_barcoding
Bioinformatic processes used to obtain invertebrate DNA barcodes from Illumina sequencing output
bash bioinformatics dna-barcoding python
Language:Python 0
mdcjansen / DBA
DNA barcoding analysis pipeline
bioinformatics bioinformatics-analysis dna dna-alignment dna-barcode dna-barcoding dna-sequences genomics sanger-chromatograms species-identification blastn mega11 genbank-files genbank fasta ab1 phylogenetics phylogeny
Language:Python 0
jphill01 / HACSim.R
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
dna-barcoding haplotype-accumulation-curves r
Language:R
rdmpage / dimacs-dnabarcode-challenge
Files from DIMACS 2007 DNA barcoding challenge
dna dna-barcoding k-mer alignment-free
Language:C