There are 1 repository under blastp topic.
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).
Parse consecutive matches in BLAST results.
A Linux command-line tool to extract homologous proteins from proteomes using DIAMOND.
Unraveling Evolutionary Relationship between Fungi Species
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
Modeling chromosomal gene location by protein composition
BLAST without Sys.Call()
This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search
Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.
Using BLAST and Transdecoder.
Pipeline to get a protein's residues conservation JSD scores