pytorch-geometric

There are 8 repositories under pytorch-geometric topic.

graphein
a-r-j / graphein
Protein Graph Library
protein protein-structure deep-learning pytorch graph-neural-networks dgl computational-biology bioinformatics structural-biology protein-data-bank protein-design geometric-deep-learning pytorch-geometric python interactomics interactome rna ppi-networks gene-regulatory-networks drug-discovery
Language:Jupyter Notebook 1129
THUMNLab / AutoGL
An autoML framework & toolkit for machine learning on graphs.
automl deep-learning graph-neural-networks hyper-parameter-optimization machine-learning neural-architecture-search pytorch pytorch-geometric
Language:Python 1106
chaitjo / geometric-gnn-dojo
Geometric GNN Dojo provides unified implementations and experiments to explore the design space of Geometric Graph Neural Networks (ICML 2023)
geometric-deep-learning graph-neural-networks equivariance equivariant-networks geometric-graphs graph-isomorphism pytorch pytorch-geometric e3nn
Language:Jupyter Notebook 495
mlabonne / graph-neural-network-course
Free hands-on course about Graph Neural Networks using PyTorch Geometric.
deep-learning graph-attention-networks graph-convolutional-networks graph-neural-networks neural-network pytorch pytorch-geometric
Language:Jupyter Notebook 399
lukecavabarrett / pna
Implementation of Principal Neighbourhood Aggregation for Graph Neural Networks in PyTorch, DGL and PyTorch Geometric
dgl graph-machine-learning graph-neural-networks pytorch pytorch-geometric
Language:Python 347
qitianwu / NodeFormer
The official implementation of NeurIPS22 spotlight paper "NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classification"
graph-neural-networks graph-structure-learning graph-transformer node-classification pytorch image-classification large-graph neurips-2022 pytorch-geometric relational-learning text-classification
Language:Jupyter Notebook 311
qitianwu / DIFFormer
The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"
attention diffusion diffusion-equation geometric-deep-learning graph-neural-networks graph-transformer iclr2023 image-classification large-graph node-classification pytorch pytorch-geometric pytorch-geometric-temporal spatial-temporal-forecasting text-classification transformer
Language:Python 296
bknyaz / graph_attention_pool
Attention over nodes in Graph Neural Networks using PyTorch (NeurIPS 2019)
graph graph-neural-networks pytorch neurips neurips-2019 attention-mechanism attention pooling pytorch-geometric
Language:Jupyter Notebook 286
SGCN
benedekrozemberczki / SGCN
A PyTorch implementation of "Signed Graph Convolutional Network" (ICDM 2018).
gcn graphsage graph-convolution graph-embedding deepwalk node2vec graph-attention network-embedding node-classification signed-network sgcn deep-learning graph-neural-networks neural-network pytorch machine-learning pytorch-geometric transformer gpt2 gpt3
Language:Python 276
yuyangw / MolCLR
Implementation of MolCLR: "Molecular Contrastive Learning of Representations via Graph Neural Networks" in PyG.
deep-learning molecule self-supervised-learning graph-neural-networks pytorch pytorch-geometric
Language:Python 274
drprojects / DeepViewAgg
[CVPR'22 Best Paper Finalist] Official PyTorch implementation of the method presented in "Learning Multi-View Aggregation In the Wild for Large-Scale 3D Semantic Segmentation"
cvpr deep-learning image multimodal multimodal-deep-learning point-cloud pytorch semantic-segmentation cvpr2022 multi-view kitti-360 pytorch-geometric s3dis torch-points3d attention point-cloud-segmentation
Language:Python 233
divelab / GOOD
GOOD: A Graph Out-of-Distribution Benchmark [NeurIPS 2022 Datasets and Benchmarks]
deep-learning distribution-shift graph-neural-networks graph-ood invariant-learning out-of-distribution-generalization pytorch pytorch-geometric
Language:Python 194
chaitjo / geometric-rna-design
gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)
geometric-deep-learning graph-neural-networks inverse-design pytorch pytorch-geometric rna-structure biomolecule-design
Language:Jupyter Notebook 191
HannesStark / 3DInfomax
Making self-supervised learning work on molecules by using their 3D geometry to pre-train GNNs. Implemented in DGL and Pytorch Geometric.
3d dgl-graph gnn graph graph-neural-networks graph-representation-learning molecules pytorch-geometric self-supervised-learning
Language:Python 166
rusty1s / pyg_autoscale
Implementation of "GNNAutoScale: Scalable and Expressive Graph Neural Networks via Historical Embeddings" in PyTorch
graph-neural-networks scalability pytorch pytorch-geometric
Language:Python 164
SherylHYX / pytorch_geometric_signed_directed
PyTorch Geometric Signed Directed is a signed/directed graph neural network extension library for PyTorch Geometric. The paper is accepted by LoG 2023.
gnn graph-neural-netowrks signed-networks directed-networks pytorch-geometric pytorch python machine-learning deep-learning networks
Language:Python 143
XiaShan1227 / GNN-Tutorial
B站GNN教程资料
attention-mechanism gat gatv2 gcn gnn graphsage heterogeneous-graph-neural-network link-prediction networkx pytorch pytorch-geometric cluster-gcn
Language:Jupyter Notebook 143
BorgwardtLab / TOGL
Topological Graph Neural Networks (ICLR 2022)
graph-classification graph-learning iclr2022 machine-learning node-classification persistent-homology pytorch pytorch-geometric
Language:Python 122
hsn
rubenwiersma / hsn
Code for SIGGRAPH paper CNNs on Surfaces using Rotation-Equivariant Features
geometric-deep-learning pytorch-geometric 3d convolutional-neural-networks pytorch siggraph
Language:Python 88
EdisonLeeeee / GreatX
A graph reliability toolbox based on PyTorch and PyTorch Geometric (PyG).
adversarial-attacks graph-convolutional-networks graph-neural-networks pytorch graph-reliability-toolbox distribution-shift inherent-noise pytorch-geometric
Language:Python 85
mukhlishga / gnn-powerflow
Graph Neural Network application in predicting AC Power Flow calculation. Developed with Pytorch Geometric framework. My Master Thesis at Eindhoven University of Technology
machine-learning artificial-intelligence neural-network graph-neural-network power-flow python pytorch pytorch-geometric electrical electrical-engineering
Language:Jupyter Notebook 85
qitianwu / GraphOOD-GNNSafe
The official implementation for ICLR23 paper "GNNSafe: Energy-based Out-of-Distribution Detection for Graph Neural Networks"
anamoly-detection artificial-intelligence deep-learning distribution-shift geometric-deep-learning graph-neural-networks label-propagation large-graph node-classification out-of-distribution-detection out-of-distribution-generalization outlier-detection pytorch pytorch-geometric trustworthy-ai
Language:Python 80
arangoml / fastgraphml
Given an input graph (ArangoDB or PyG) it generates graph embeddings using Low-Code framework built on top of PyG.
embeddings graph-machine-learning graph-neural-networks machine-learning pytorch-geometric
Language:Python 68
SRA2 / SPELL
Learning Long-Term Spatial-Temporal Graphs for Active Speaker Detection (ECCV 2022)
active-speaker-detection ava-dataset eccv eccv2022 graph-learning pytorch-geometric
Language:Python 65
DeepPBS
timkartar / DeepPBS
Geometric deep learning of protein–DNA binding specificity
binding-specificity geometric-deep-learning molecular-dynamics-simulation p53 protein-design protein-dna python pytorch pytorch-geometric
Language:Python 64
leson502 / CORECT_EMNLP2023
[EMNLP2023] Conversation Understanding using Relational Temporal Graph Neural Networks with Auxiliary Cross-Modality Interaction
graph-neural-networks pytorch-geometric torch transformer
Language:Python 63
spatiotemporal_datasets
benedekrozemberczki / spatiotemporal_datasets
Spatiotemporal datasets collected for network science, deep learning and general machine learning research.
deep-learning machine-learning gcn gnn time-series time-series-analysis analytics deepwalk node2vec spatial-analysis spatial-data pytorch pytorch-geometric dataset benchmark spatial-data-analysis data-science epidemiology vector-autoregression
60
IntelLabs / GraVi-T
Graph learning framework for long-term video understanding
graph-learning pytorch-geometric video-understanding
Language:Python 60
gospodima / Extended-SimGNN
A PyTorch Geometric implementation of SimGNN with some extensions.
deep-learning gcn gnn graph-convolutional-networks graph-edit-distance graph-isomorphism-network graph-neural-networks machine-learning network-embedding pytorch pytorch-geometric simgnn
Language:Python 58
tk-rusch / GraphCON
GraphCON (ICML 2022)
graph-attention-networks graph-convolutional-networks graph-neural-networks icml icml-2022 oversmoothing pytorch-geometric
Language:Python 58
mlvlab / SELAR
Official PyTorch Implementation of "Self-supervised Auxiliary Learning with Meta-paths for Heterogeneous Graphs". NeurIPS 2020.
graph-neural-networks machine-learning pytorch-geometric
Language:Python 54
tk-rusch / gradientgating
Gradient gating (ICLR 2023)
gat gcn graph-neural-networks graphsage heterophily message-passing oversmoothing pytorch-geometric iclr iclr2023 pytorch
Language:Python 53
sisaman / GAP
GAP: Differentially Private Graph Neural Networks with Aggregation Perturbation (USENIX Security '23)
deep-learning pytorch differential-privacy graph-neural-networks pytorch-geometric graph-deep-learning privacy-preserving-machine-learning
Language:Jupyter Notebook 49
balcilar / gnn-spectral-expressive-power
Code of "Analyzing the Expressive Power of Graph Neural Networks in a Spectral Perspective" paper published in ICLR2021
datasets expressiveness-analysis gnn graph pytorch-geometric spectral-analysis tensorflow
Language:Python 46
sisaman / LPGNN
Locally Private Graph Neural Networks (ACM CCS 2021)
graph-neural-networks differential-privacy deep-learning pytorch pytorch-geometric graph-deep-learning deep-graph-library
Language:Jupyter Notebook 45
pytorch-gnn-research
youyoungjang / pytorch-gnn-research
Various Applications and Descriptions of GNN with Pytorch, Pytorch Geometric.
graph-neural-networks pytorch pytorch-biggraph pytorch-geometric
Language:Jupyter Notebook 36